Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g117 ATGTCGAGCCCAGAGGCAAAGCTTGGGATGAGAGTGGAAGACTTGTGGGATGTTCAGGAGCCGCAGCTGACTCCTACAGAGAAGCTCAATGCATGCTTTGAAAGTGTGCCCGTCTCTGCTTTTCCACCAGCTTCTTCTCAAGTGATTGAGATAAAATCAGACTGCAGTTTGGCTGAAGCTGTTCAAATACTGACCAAGCACAGAATTCTCAGTGCACCTGTGGTGGATGTTGAGGCACCGGAGGACGCGAGTTGGATCGACAGATACATTGGCATTGTAGAGTTTGCGGGTATTGTCGTATGGATTCTGTATCAGTCAGAGCTTGCATCTCCCCGGAAGAATGGTGGGGCTCCTGCTGCAGGGTTTGGCACAGGTGGGAAAGAGGAAGCCATAACTGCTGTTGCTGCAGCTGCTAATGGAATGAATTCTCCTAGAAGGCTTAAGAACTTAGGCTTTGAACCAGCTGAACCGACTCCAGGGAGCTTCTTTGAGGCTTTAACCTCTTCGGAATTTTACAAGAACACAAAGGTACGGGACATCTCGGGATCATTTCGCTGGGCTCCGTTTCTTGCTTTGCAGAAATCCAACTCCTTCTTGACCATGCTCTTGCTGCTTTCCAACTACAAAATGAAGAGTGTCCCTGTGGTTGATCTGGGCGAAGGAAAGATTGATAACATTGTCACGCAGTCTGCTGTCATTCACATGTTAGCGGAATGTGTCGGGCTCTCTTGGTTCGAAAGATGGGGAGCTAAGAAAATGTCTGAACTCGGCCTTCCCACAATGAAGCCTGATCAAGTTATCAAGGTGAACGAGGATGAACCAGTTCTCCAGGCGTTTAAATTGATGAGGAAGAAGGGGATCGGAGGGATACCTGTGGTTGAAAGCGGAGGTAGAAAGGCTGTTGGTAATATTAGTATAAGAGATGTTCAGTTCCTTCTAACCACACCAGAGATCTACAGAGAGTTCAGATCGATCACAGCCAAGAACTTCCTCGTGGCAGTTAGGAAGTACCTGGAGCAGCACAACGAGGCCTCACCCATGTTGAGTGGTATGATCACCTGCAGACGAAATCAAACAGTCAAGGAAATGATTCTAATGCTCGACTCAGTGAAGATCCAAAGGGTTTATGTTGTGGATGAAGATGGGAATCTGGAGGGGGTGATCACGCTCAGAGACATAATCTCGAAGCTAGTGCACGAGCCTCGCGGCTACTTCGGGGATTTCTTTGATGGCGTTTTGCCAATGCCTCAGAACAGCAGAGTGTAA 1266 48.18 MSSPEAKLGMRVEDLWDVQEPQLTPTEKLNACFESVPVSAFPPASSQVIEIKSDCSLAEAVQILTKHRILSAPVVDVEAPEDASWIDRYIGIVEFAGIVVWILYQSELASPRKNGGAPAAGFGTGGKEEAITAVAAAANGMNSPRRLKNLGFEPAEPTPGSFFEALTSSEFYKNTKVRDISGSFRWAPFLALQKSNSFLTMLLLLSNYKMKSVPVVDLGEGKIDNIVTQSAVIHMLAECVGLSWFERWGAKKMSELGLPTMKPDQVIKVNEDEPVLQAFKLMRKKGIGGIPVVESGGRKAVGNISIRDVQFLLTTPEIYREFRSITAKNFLVAVRKYLEQHNEASPMLSGMITCRRNQTVKEMILMLDSVKIQRVYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDGVLPMPQNSRV* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1033933 1037516 - Vvi17g117 Vvi17g117 778814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g117 421 Gene3D - 250 400 IPR046342 -
Vvi17g117 421 ProSiteProfiles CBS domain profile. 261 321 IPR000644 -
Vvi17g117 421 CDD CBS_pair_SF 264 394 - -
Vvi17g117 421 Pfam CBS domain 347 398 IPR000644 -
Vvi17g117 421 Pfam CBS domain 265 309 IPR000644 -
Vvi17g117 421 Pfam CBS domain 45 94 IPR000644 -
Vvi17g117 421 ProSiteProfiles CBS domain profile. 347 405 IPR000644 -
Vvi17g117 421 SUPERFAMILY CBS-domain pair 255 407 IPR046342 -
Vvi17g117 421 Gene3D - 16 241 IPR046342 -
Vvi17g117 421 SMART cbs_1 350 398 IPR000644 -
Vvi17g117 421 SMART cbs_1 188 237 IPR000644 -
Vvi17g117 421 SMART cbs_1 265 314 IPR000644 -
Vvi17g117 421 SMART cbs_1 47 103 IPR000644 -
Vvi17g117 421 SUPERFAMILY CBS-domain pair 22 237 IPR046342 -
Vvi17g117 421 ProSiteProfiles CBS domain profile. 44 108 IPR000644 -
Vvi17g117 421 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 2 421 - -
Vvi17g117 421 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 2 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g117 - - - vvi:100259395 813.913
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43