Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g12 ATGGATCCCGACGCTTTCACGGCCAGTTTATTCAAGTGGGACCCAAGAGGGGCGGTGGCACCGCCGAACCGGCTGCTGGAAGCGCTGGGAGGTCTGGAGGATTTGTTTCAAGAGTACGGTGTCAGATACTACACAGCGGCCAAGATAGCTGAGCTGGGGTTCACGGTGAGTACGCTTCTGGACATGAAGGACGAGGAGCTGGACGACATGATGAACAGCCTTTGTCAGATTTTCCGGTGGGACCTCCTCGTCGGTGAGAGATACGGTATTAAAGCCGCCGTTAGAGCCGAGAGGCGACGCCTGGATGAAGAAGAGTCACGCCGGCGCCACCTCCTCTCTGCCGACACAGCCAACGCTATCGACGCACTATCCCAAGAAGGACTGTCGGAGGAGCCAGTACAGCAAGAGAAGGAAGCAGGGGGAAGCGGGGGAGTGGGAACGTGGGAGGTGGTGGTGGCCGGAGAGAGGAAGAAGCAGCAGCGGAGAAAGAAGGGGAAGACCAGAATGGGGTCGGCGGATGATAACATGAACGAAGATGACAACGAAGGTGGGGATGAAGACGATGACAAGGGTAGCGGTGAGCGTGGAAGCGAGAGGCAGAGGGAGCATCCATTCATAGTGACGGAGCCAGGAGAGGTTGCTCGTGGTAAGAAGAATGGGCTAGATTACCTCTTCCATCTCTACGAGCAATGCCGTGATTTCTTGATCCAGGTTCAGAACATTGCCAAAGAGCGCGGTGAGAAGTGCCCTACTAAGGTGACGAACCAGGTGTTTAGATACGCAAAGAAGGCGGGAGCAAGCTACATCAACAAACCCAAGATGCGACACTACGTACATTGCTATGCTCTGCATTGTCTTGATGAGGAGGCTTCCAATGCCTTAAGGAGAGCTTTCAAGGAGAGAGGAGAGAACGTTGGGGCTTGGAGGCAGGCCTGTTACAAGCCTCTTGTCGCCCTTGCTGCTCGCCAAGGTTGGGACATCGATGCCATCTTCAATGCCCATCCCCGACTTGCTATCTGGTACGTACCCACCAGGCTTCGCCAACTCTGCCACTCCGAGCGCAGCAACGCAGCAGCAGCCGCAGCAGCAGCTGCATCTAGCTGTATCTCCGGTGGAGCTGATCACTTGCCATTCTGA 1137 55.76 MDPDAFTASLFKWDPRGAVAPPNRLLEALGGLEDLFQEYGVRYYTAAKIAELGFTVSTLLDMKDEELDDMMNSLCQIFRWDLLVGERYGIKAAVRAERRRLDEEESRRRHLLSADTANAIDALSQEGLSEEPVQQEKEAGGSGGVGTWEVVVAGERKKQQRRKKGKTRMGSADDNMNEDDNEGGDEDDDKGSGERGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVALAARQGWDIDAIFNAHPRLAIWYVPTRLRQLCHSERSNAAAAAAAAASSCISGGADHLPF* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 71717 73739 + Vvi17g12 Vvi17g12 778709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g12 378 MobiDBLite consensus disorder prediction 188 206 - -
Vvi17g12 378 Pfam Floricaula / Leafy protein SAM domain 28 105 IPR035079 -
Vvi17g12 378 PANTHER PROTEIN LEAFY 1 376 IPR002910 GO:0003677|GO:0006355
Vvi17g12 378 MobiDBLite consensus disorder prediction 125 206 - -
Vvi17g12 378 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 192 358 IPR035209 GO:0003677
Vvi17g12 378 Gene3D Protein LEAFY 195 364 IPR038276 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14171 PF17538 C_LFY_FLO 1.70E-110 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g12 - - vvi:100252653 682.559