Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g121 ATGGAGCTGACCCCTGCAGCCCGGAGGAAGAAGCCAAAGCTTCCAGAAAAGCAAATACCTGATAAAATTGCTGCCCTAGTGCCGGAGTCTGCTATTTATACACAGTTGGTTGAATTGGAGGCCCGGGTGGATGCTGCTCTTGCAAGAAAGAAGACTGATATCCAAGAGTCCCTCAAAAACCCTCATCGTGTTCAGAAAACACTTCGGATTTATGTTTTCAATACTTTTGCAAATCAGACAAGAATGAACCCGGAGAAAACAAACGCAGAGCCTCCTTCATGGACACTTAAGATAATTGGGAGGATCTTGGAAGATGGGGTAGACCCTGTCCTTGCGGGAACTAGTGATAAATTGAGCTCTTCATACCCAAAATTTTCATCTTTCTTTAAGAAAATGACTATTTACTTGGACCAGGGTCTTTATCCGGATAACCATGTAATTTTATGGGAGAATGCTCGGTCTCCTACACTTCATGAGGGCTTTGAAGTGCAAAGGAAGGGGGATAAAGAATTCAACGCAATAATAAGATTAGAAATGAATTATGTACCTGAAAAATTTAAACTTTCAACAGCCCTGTCGGAAGTTCTTGGACTTGAGGTAGATACACGCCCAAGGATTGTAGCTGCAATCTGGCACTATGTGAAGAGTAGGAAGTTACAGAACCCGAATGACCCCTCATTCTTTGTGTGTGATCCACCTCTTCGTAAAGTATTTGGGGAAGAGAAAATAAAATTTGCCATGGTTCCACAAAAGATATCACATCATTTGTCTCCCCCACAACCTATACATTTGGAGCATAAGGTCAAGCTTTCAGGGAATAGTCCAGCTGGAACTACGTGTTATGATGTGTTGGTTGATGTACCTCTTCCATTAGAGAAGGAAATGTCTGCTTTCTTGGCAAACACTGAGAGGCATAAAGAGATTGATGCCTATGATGAAACAATTTGCGCTTCTATAAAGAAGATTCAAGAGCACAATCGAAGGCGGGCTTTCTTCCTTGGTTTCAGTCACTCTCCAGCAGAGTTTATTAATGCTTTGATAACTTCTCAAAGCAGGGATCTAAAACTTGTTGCAGGAGATGCAAGTCGTAATGCTGAAAAGGAGCGGCGAGCTGACTTCTATAACCAACCTTGGGTTGATGATGCTGTTATCCGCTACTTGAACCGCAAGCCTGCTCCCGGAATGGAAGCACATGAATAG 1200 42.75 MELTPAARRKKPKLPEKQIPDKIAALVPESAIYTQLVELEARVDAALARKKTDIQESLKNPHRVQKTLRIYVFNTFANQTRMNPEKTNAEPPSWTLKIIGRILEDGVDPVLAGTSDKLSSSYPKFSSFFKKMTIYLDQGLYPDNHVILWENARSPTLHEGFEVQRKGDKEFNAIIRLEMNYVPEKFKLSTALSEVLGLEVDTRPRIVAAIWHYVKSRKLQNPNDPSFFVCDPPLRKVFGEEKIKFAMVPQKISHHLSPPQPIHLEHKVKLSGNSPAGTTCYDVLVDVPLPLEKEMSAFLANTERHKEIDAYDETICASIKKIQEHNRRRAFFLGFSHSPAEFINALITSQSRDLKLVAGDASRNAEKERRADFYNQPWVDDAVIRYLNRKPAPGMEAHE* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1071680 1074904 - Vvi17g121 Vvi17g121 778818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g121 399 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 397 - -
Vvi17g121 399 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 1 397 - -
Vvi17g121 399 Gene3D SWIB/MDM2 domain 178 263 IPR036885 -
Vvi17g121 399 SUPERFAMILY SWIB/MDM2 domain 176 266 IPR036885 -
Vvi17g121 399 CDD SWIB_like 188 256 - -
Vvi17g121 399 Pfam SWIB/MDM2 domain 185 256 IPR003121 -
Vvi17g121 399 ProSiteProfiles SWIB/MDM2 domain profile. 181 258 IPR003121 -
Vvi17g121 399 SMART swib_2 182 261 IPR019835 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g121 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D - vvi:100250968 800.431
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1177 Vvi17g121 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g121 . . . . . . . Bma12g01080 . . . Cma11g00039 . Car11g00035 . . Cpe04g01610 . . . . . . . . . . . . . . . . . Cone19ag0204 . . . . . . . . . . . . . . Cmo11g00040 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001873 2 3 1 1 2 2 3 1 2 2 2 1 3 2 1 3 1 5 3 2 2 2 1 3 3 1 2 5 3 2 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14172 PF02201 SWIB 4.50E-23 No_clan Vvi TR