Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g125 ATGGCTGTGACATTCTATGGTGTCAACTCAGGCTCTGGCCTCAAGAAGCTTGATGAGTACCTCCTGACTAGGAGTTACATCAGTGGGTACCAAGCTTCAAAGGATGATATCACTGTTCATGCAGCTCTTTCAAAGGCTCCATCATCTGAATACGTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTTGATGCAGTTGCAACTCCTCCTGCTGAAGACACTAAGGCCACAGCTGCCGAGGATGATGATGATGATGATGTGGATCTGTTTGGTGAAGAAACTGAAGAAGAAAAGAAGGCTGCTGAAGCACGAGCGGCAGCTGTCAAGGCTTCTGGAAAGAAGAAAGAGTCTGGCAAGTCTTCAGTTTTGTTGGATGTGAAACCATGGGATGATGAGACTGACATGAAAAAGCTTGAGGAAGCAGTACGTAGCATTAAAATGGAAGGGTTGTTATGGGGAGCATCCAAACTTGTACCAGTTGGATATGGTATAAAGAAATTGCAGATTATGCTTACCATTGTGGACGACTTGGTTTCTGTGGACGACCTTATTGAGGAACAGTTGACTGTTGAACCCACGAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAGATATTGTTAATTCATGCTCTGATTCATCTGATTTGTGTTTACAGAATTTGA 738 44.17 MAVTFYGVNSGSGLKKLDEYLLTRSYISGYQASKDDITVHAALSKAPSSEYVNVSRWYNHIESLLRISGVSGEGCGVTIEGFAPVDAVATPPAEDTKATAAEDDDDDDVDLFGEETEEEKKAAEARAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEEQLTVEPTNEYVQSCDIVAFNKILLIHALIHLICVYRI* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1091338 1094293 - Vvi17g125 Vvi17g125 778822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g125 245 Gene3D - 134 230 IPR014717 -
Vvi17g125 245 MobiDBLite consensus disorder prediction 115 134 - -
Vvi17g125 245 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 219 230 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi17g125 245 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 234 - -
Vvi17g125 245 SMART EF1_GNE_2 141 230 IPR014038 GO:0003746|GO:0006414
Vvi17g125 245 MobiDBLite consensus disorder prediction 90 109 - -
Vvi17g125 245 CDD EF1B 139 230 IPR014038 GO:0003746|GO:0006414
Vvi17g125 245 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 105 113 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi17g125 245 Gene3D - 7 74 - -
Vvi17g125 245 Pfam EF-1 guanine nucleotide exchange domain 143 230 IPR014038 GO:0003746|GO:0006414
Vvi17g125 245 PANTHER RIPENING REGULATED PROTEIN DDTFR10-LIKE 1 234 - -
Vvi17g125 245 SUPERFAMILY eEF-1beta-like 138 230 IPR036219 -
Vvi17g125 245 Coils Coil 113 133 - -
Vvi17g125 245 SUPERFAMILY GST C-terminal domain-like 11 68 IPR036282 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g125 K03232 - vvi:100252524 353.984