Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g126 ATGGTGTCCACGCGACGGAGTGGATCTCTCTCCGGCAACACTAACAAGCGATCTTCACCTTCGGAGGACAAGCCTCCCTCGCCCAAGCGTCAAAAGGTTGACAACAGTGGTGCTGCTTCAGAGAAGGCGGCGCCGGCGGTGGATAATTCGAAGGAATTCTGTGCGACAGCATCAGGGGCTGATCCCGTGGAATGTGGTTCCGGAGATCCTCCCATTTCCGGCGGTGCCTCTGGGGAAGCGGTGAATTCTGGGAAGGACGAGGCGGCTTTGGCGGCTCCGGTCTCGGCTCCGATCGCTGAGGGGACTTCGCCGATTGTGGTGGATAAGCCGAGGAGTTCTTTCTCGTCCTGGAGTGTTTATCAGAAGCAGAACTACGAGACTTCGATGCCCTGGTGTAAGCTTCTTTCGCAATTTTCACAGAACCCTAATGTTTCCATTGGTGTTATCAATTTCACCATTGGGTCAAGTCGACATTGTAATTTTCCCTTGAAGGATCAAACTATCAGTCCAATTTTGTGCAAGATTAAGCATAGTCAGCGTGAAGGCAGTGCTGTAGCAGTGCTAGAGAGTTCGGGTAGTAAGGGTTCGGTGCAGGTTAATGGGACTTTCATCAAGAGGGGTACCAGCTGTGTCCTTAACTCAGGGGATGAGGTGGTCTTTGGTTTGCTGGGGAACCATGCTTATATTTTCCAGCAACTTGTGACTGAGGTTGCTATTAAGGCACCTTCTTCAGGTGCTACGGGTGCTGAGGTTCAGAGTAGTGTGGGAAAATATCTGCACGTTGAAAGGAGGTCAGGGGATCCTTCAGCTGTTGCTGGGGCATCCATATTGGCATCTCTTTCAAGCCTGAGGCAAGATTTATCGCGTTGGAAGTCTCCGCCTCTCACCACTGGCAAAACCCAGCAAGGGACTGAACTGCCTCCTCATCCTATTATTCATGATAGTCCGGAGGTGGAGTTCAATGGTCTGGAAGGGAATTCGACTGCAAATGGTGGGAGTGATAAAGCTGCTGACATTGCAGCAGTCAGCAAGAACCTTTCTCTCGACTGCAACCAGGACTCTGGTGCAGAGGCAGGCAATGTATTGGAAGAAAGAAACGAGTGGACAAGGGATTCGCTGCCTGCATCCACATCAGGTATGTCTCTGCGGTGTGCAGTTTTCAAAGAAGACATTCACGCAGGAATTCTTGATGGCAAAGAGATACAAGTTTCATTTGATGATTTCCCATATTATTTAAGTGAAAATACGAAGAATGTTTTGATTGCTGCCTCATTTATACACCTGAAGCACAGAGAACATGCAAAATTTACATCAGAGCTTACTACTGTGAACCCAAGAATTTTGCTTTCTGGTCCGGCAGGGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTGGTTTATCTTCAAAGGAAGCAGAGCTGCTAAAAGATGGATCTAATGCAGAAAAATTCTGCAGCTGTACCAAACAAAGTTCTGGGTCCACTGAACTGGCTAAGAATATGGCTTCTTCAGCTGGTGAAGCAGATACACCCAACATTGCAAATGCACCGATTTCTTGTGAGCTGGAATCTCAACCAAAGCTGGAAAATGACACTGTACCCTCTTCTTCTGGGACAACTAAGAATCACTTGTTTAGAATAGGTGACAGAGTCAGATTCATGGGTTCAGCTTCTGGTGGATCATATTCAGCAGTTTCTGCTTCAAGGGGCCCGACATTTGGAATCCGTGGAAAGGTTCTATTACCTTTTGAAGATAATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGTTAATGATCTTCGTTTGGAAAACACGGGTGTGGAAGATCTGGACAAGTTACTCATTAACACATTGTTTGAGGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAAGCAGACTCGAAAAACTTCCAGATAATGTCGTCATAATTGGTTCCCATACTCATACTGACAATCGCAAGGAAAAGTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCGGATAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGGATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAAACTCTTAAAATGAAGGGAAATTTGAATCATCTTCGCACTGTTCTGACTCGGAGTGGGATGGAATGTGATGGACTTGAGAAATTGTGCATCAAGGACCAAACACTTACAAATGAAAGTGCGGAGAAGGTAGTTGGATGGGCTGTGAGCCATTATCTAATGTCAAATCCTGAAGCTGATGCTGATACAAGGCTGGTTTTGTCTAGTGAAAGTATCCAGTATGGAATCGGAATTCTTCAGGCTATTCAGAATGAGTCTAAGAGCTTGAAGAAGTCACTCAAGGATGTTGTAACAGAAAATGAATTTGAGAAAAGGCTTCTAGCTGATGTTATTCCACCATCTGACATTGGGGTCACATTTGATGATATTGGGGCCCTGGAAAATGTCAAGGACACATTGAAGGAGTTGGTGATGCTTCCACTACAAAGGCCTGAACTTTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGCATACTTCTATTTGGCCCCCCTGGAACAGGCAAGACAATGCTTGCTAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAATATTTCAATGTCAAGCATCACATCTAAGTGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATCTTTGTGTAACTGCTGCACATCGTCCTATCAGAGAGATACTGGAAAAAGAAAAAAAGGAACGAGCTGCAGCACAAGCCGAGGGCAGACCTCCTCCAGCTTTGAGTGGGAGTGCTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAATGGAATGAACTTTATGGAGAAGGGGGTTCTAGAAGAAAGAAGGCTCTCAGCTACTTCATGTGA 3651 45.41 MVSTRRSGSLSGNTNKRSSPSEDKPPSPKRQKVDNSGAASEKAAPAVDNSKEFCATASGADPVECGSGDPPISGGASGEAVNSGKDEAALAAPVSAPIAEGTSPIVVDKPRSSFSSWSVYQKQNYETSMPWCKLLSQFSQNPNVSIGVINFTIGSSRHCNFPLKDQTISPILCKIKHSQREGSAVAVLESSGSKGSVQVNGTFIKRGTSCVLNSGDEVVFGLLGNHAYIFQQLVTEVAIKAPSSGATGAEVQSSVGKYLHVERRSGDPSAVAGASILASLSSLRQDLSRWKSPPLTTGKTQQGTELPPHPIIHDSPEVEFNGLEGNSTANGGSDKAADIAAVSKNLSLDCNQDSGAEAGNVLEERNEWTRDSLPASTSGMSLRCAVFKEDIHAGILDGKEIQVSFDDFPYYLSENTKNVLIAASFIHLKHREHAKFTSELTTVNPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDSHSFLGGLSSKEAELLKDGSNAEKFCSCTKQSSGSTELAKNMASSAGEADTPNIANAPISCELESQPKLENDTVPSSSGTTKNHLFRIGDRVRFMGSASGGSYSAVSASRGPTFGIRGKVLLPFEDNPLSKIGVRFDKLITDGVDLGGLCEPGYGFFCNVNDLRLENTGVEDLDKLLINTLFEAVYSESRDSPFILFMKDAEKSIVGNSESYSMFKSRLEKLPDNVVIIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKDVPKTTKLLTKLFPNKVTIHMPQDEALLACWKHQLDRDSETLKMKGNLNHLRTVLTRSGMECDGLEKLCIKDQTLTNESAEKVVGWAVSHYLMSNPEADADTRLVLSSESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIREILEKEKKERAAAQAEGRPPPALSGSADIRPLNIDDFKYAHERVCASVSSESVNMTELIQWNELYGEGGSRRKKALSYFM* 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1100350 1115997 + Vvi17g126 Vvi17g126 778823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g126 1216 Gene3D - 130 238 - -
Vvi17g126 1216 SUPERFAMILY SMAD/FHA domain 150 228 IPR008984 GO:0005515
Vvi17g126 1216 ProSitePatterns AAA-protein family signature. 1055 1074 IPR003960 GO:0005524|GO:0016887
Vvi17g126 1216 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 1216 - -
Vvi17g126 1216 MobiDBLite consensus disorder prediction 289 314 - -
Vvi17g126 1216 CDD FHA 151 231 IPR000253 GO:0005515
Vvi17g126 1216 MobiDBLite consensus disorder prediction 1143 1165 - -
Vvi17g126 1216 Pfam AAA+ lid domain 1105 1140 IPR041569 -
Vvi17g126 1216 Gene3D - 1084 1178 - -
Vvi17g126 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1193 IPR027417 -
Vvi17g126 1216 Pfam FHA domain 152 221 IPR000253 GO:0005515
Vvi17g126 1216 MobiDBLite consensus disorder prediction 289 304 - -
Vvi17g126 1216 SMART AAA_5 948 1085 IPR003593 -
Vvi17g126 1216 Coils Coil 872 892 - -
Vvi17g126 1216 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g126 1216 Gene3D - 910 1191 IPR027417 -
Vvi17g126 1216 MobiDBLite consensus disorder prediction 1 49 - -
Vvi17g126 1216 CDD AAA 950 1083 - -
Vvi17g126 1216 Pfam ATPase family associated with various cellular activities (AAA) 952 1081 IPR003959 GO:0005524|GO:0016887
Vvi17g126 1216 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 1216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g126 - - - vvi:100266414 2345.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53