Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g13 ATGGAAGACTCTCTACGCAAAGCCCTATCCGAGAAACAAGCCGCCGTCGACGCCCAAGGCGGCGCCGTCAGGGAGCTCAAGGCCTCCGGCGCTCCCAAGGATGCGATCGACGCCGCCGTCCAAGAGCTCAACGCCTTGAAGCTTGAGAAGGCTTCCATTGAGAAGCAGCTGCAAGCCGCCCTCACTAACGGCAACGATAACGCGCTCAGTAGGGATGCCTTCCGCCAGGCCCTGGTCAACACCCTTGAGAGGCGCCTCTTTTACATACCCTCCTTCAAGATCTATCGTGGGGTCGCCGGCCTTTACGACTATGGCCCTCCCGGTTGCGCCGTCAAGTCCAATGTTCTCGCCTTCTGGCGTCAGCATTTTGTTCTGGAGGAGAATATGTTGGAAGTTGATTGCCCATGTGTGACACCAGAAATTGTATTGAAGGCATCGGGTCATGTTGATAAGTTCACTGATCTTATGGTGAAGGATGAAAAAACGGGTACCTGTTACCGTGCTGATCACTTGCTCAAGGATTTCTGCAAAGAGAAGCTTGAGAAGGACCTTACTATCAGTGGGGAGAAGGCAGCAGAATTGAAACATATTCTGGCTGTTCTTGATGATCTTTCTGCTGAGGAATTGGGTGGCAAGATCAAGGAATATGGTATAACTGCCCCTGATACAAAAAACCCGCTTTCTGCTCCTTATCCATTCAATTTGATGTTCCAGACCTCAATCGGCCCATCTGGCTTGAGCCCAGGGTATATGCGGCCAGAGACAGCACAGGGCATTTTTGTAAACTTCAAGGATCTGTATTACTATAATGGGAACAAGCTCCCTTTTGCTGCAGCTCAAATTGGTCAGGCTTTTAGAAATGAGATATCTCCACGCCAAGGTCTCTTAAGAGTTCGTGAATTTACTCTGGCTGAGATTGAGCACTTTGTGGATCCTGATGACAAGTCTCACCCAAAATTTTCTGAAGTTGCAAATTTGGAGTTCTTGATGTTTCCAAGGGGGGAGCAGGTTTCTGGACAATCAGCAAAGAGAACGGTCCTTGGTGAAGCAGTTTCAAAGGGCATTGTCAACAATGAAACACTTGGCTATTTCATAGGGAGGGTGTATCTGTTCCTAACAGGCCTTGGTATCGACAAGGAGCGCCTACGTTTCCGGCAGCATCTTGCAAATGAGATGGCTCACTATGCTGCAGACTGTTGGGATGCTGAGATTGAGTGCTCTTATGGATGGATTGAGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACGGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAGGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGGGAGAGGTAGGGTTCCATGTCTGCACTCTTGGGAAAGATGTCACTATAACGAAGAAAATGCTGTCGATCTCCAAGGAGAAAAAGAAGGAACATCAAAGGGTTTTCACACCTTCAGTTATTGAACCATCGTTTGGAATTGGGCGAATAATCTACTGTCTTTATGAGCATTCCTTCTACACGAGGCCTAGTAAAGCTGGGGATGAACAGTTGAATGTATTCCGCTTCCCTCCCCTTGTTGCACCTATCAAATGCACTGTATTCCCGCTGGTGCAAAATCAGCAATACGAGGAAGTTGCCAAAAGCATTGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCTTGCCATCACAGTGGATTCTACATCCTCGGTGACAATCAGGGAGAGAGATAGCAAGGATCAAATTCGTGTTAGTGTGGAGGAGGTGGCATCTGTAGTCAAGGAGGTGACTGATGGTCAGAGCACATGGGCTGATGTACTATGGAGATACCCTACTCATTCATCTGCGTCTGTGGATGAGTGA 2064 47.58 MEDSLRKALSEKQAAVDAQGGAVRELKASGAPKDAIDAAVQELNALKLEKASIEKQLQAALTNGNDNALSRDAFRQALVNTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCKEKLEKDLTISGEKAAELKHILAVLDDLSAEELGGKIKEYGITAPDTKNPLSAPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPDDKSHPKFSEVANLEFLMFPRGEQVSGQSAKRTVLGEAVSKGIVNNETLGYFIGRVYLFLTGLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTDKSGVPLVAHEKFAEPREVEKLIIAPVKKELGLAFKGNQKMVVEALEAMSEKEAMEMKATLESTGEVGFHVCTLGKDVTITKKMLSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKSIAKSLTAAGISYKIDITGTSIGKRYARTDELGVPLAITVDSTSSVTIRERDSKDQIRVSVEEVASVVKEVTDGQSTWADVLWRYPTHSSASVDE* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 74093 79126 - Vvi17g13 Vvi17g13 778710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g13 687 CDD WHEPGMRS_RNA 13 49 - -
Vvi17g13 687 CDD GlyRS-like_core 78 424 IPR033731 -
Vvi17g13 687 SUPERFAMILY Class II aaRS and biotin synthetases 75 578 IPR045864 -
Vvi17g13 687 SMART WHEP_TRS_a_2_a_3_a 12 65 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g13 687 TIGRFAM glyS_dimeric: glycine--tRNA ligase 76 663 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vvi17g13 687 Coils Coil 36 63 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 94 108 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 231 243 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 250 267 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 282 299 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 299 309 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 529 541 - -
Vvi17g13 687 PRINTS Glycyl-tRNA synthetase signature 614 633 - -
Vvi17g13 687 ProSiteProfiles WHEP-TRS domain profile. 8 64 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g13 687 Gene3D - 12 59 - -
Vvi17g13 687 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 2 686 IPR027031 -
Vvi17g13 687 Pfam WHEP-TRS domain 14 52 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g13 687 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 72 554 IPR006195 -
Vvi17g13 687 SUPERFAMILY S15/NS1 RNA-binding domain 15 60 IPR009068 -
Vvi17g13 687 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 250 548 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi17g13 687 Pfam Anticodon binding domain 575 662 IPR004154 -
Vvi17g13 687 Gene3D - 573 683 IPR036621 -
Vvi17g13 687 Gene3D - 452 520 - -
Vvi17g13 687 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 2 686 - -
Vvi17g13 687 Gene3D - 151 235 - -
Vvi17g13 687 Gene3D Bira Bifunctional Protein; Domain 2 80 441 IPR045864 -
Vvi17g13 687 SUPERFAMILY Class II aaRS ABD-related 563 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g13 K01880 GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14] - vvi:100257704 1345.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1354 Vvi17g13 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g13 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47