Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g133 ATGGAGACTCCCTCCGGTGCCCATTTCTACGGTTTGCGTCCCGATGGCCTTCTCTCCTCCTCTGCTTCGTCTCCGCGCTCTCCTTCCTCTTCACTCTCTGTACCTTCCGGTGATCATAGCCTTCCGAAACAGCCCTTCGTTATAGGAGTAACGGGAGGTACGGCATCAGGGAAGACTACAGTGTGTGATATGATTATTCAACAACTACATGATCATAGAGTTGTGCTTGTCAATCAGGATTCTTTCTACCGCGGTTTAACAGCTAAAGAATTGGAAGATGTGCATAAATATAATTTTGATCATCCAGATGCATTTGATACGGAACAACTTCTGGATTGCATTCACAAGCTCAAGTCTGGACAGTCTGTTCATGTTCCAATATATGATTTTAAGACTCATCAACGTTGTTCTGATAGTTTTCGACAGGTAAATGCTTCTGATGTAATTATTTTGGAGGGCATACTGGTATTCCATGATCAGTGTGTTCGGGACTTGATGAATATGAAAATCTTTGTTGATGCAGATGCTGATGTAAGGCTTGCTCGCAGAATAAGTCGTGACACAGTTGAGAGGGGTAGAGATATACAGTCTGTTCTTGAACAGTATGCGAAATTCGTCAAGCCTGCTTTTGATAATTTTATTCTTCCATCAAAGAAGTTTGCTGATGTTATCATACCTCGGGGTGGTGAGAATCATGTTGCAATTGATTTGATTGTGCAACATATCCGCACAAAGCTTGGCCAGCATGATCTCTGCAAAATATATCCTAATGTGAATGTTATTCACTCTACATTCCAGATAAGGGGTATGCATACTCTGATTCGTGACAGAGAAATATCGAAACATGATTTTGTTTTTTATTCAGACCGGCTGATACGCCTGGTTGTGGAGCATGGCCTTGGCTACTTGCCATTCCTCGAGAAGCAAGTGTTCACTCCAACAGGATCAGTATATACTGGAGTTGAATTTTGCAAGAAACTGTGTGGAGTATCCATTATCCGAAGCGGTGAAAGCATGGAAAATGCATTGCGGGCATGTTGCAAAGGAATAAAAATAGGGAAAATCCTCATTCACCGTGACGGTGATAACGGGAAACAGCTTATATATGAGAAGCTTCCCAAAGATATTTCAGAACGGCATGTCCTCCTCCTGGACCCAGTTCTTGCTACTGGCAACTCCGCAAACCAGGCAATCGAACTTCTTATAAAGAAGGGGGTTCCGGAATCCTCCATAATATTCCTTAATCTTATCTCTGCTCCAGAGGGAATACAGTGCGTATGCAATAGGTTCCCATCTCTGAAAATTGTGACGTCGGAGATTGATGCTAAATTAAATGAGGAGTTTCGAGTCATACCAGGGTTGGGGGAGTTTGGTGACCGCTACTTTGGCACTGATGATTACTTTGTGCCAATTGAATAA 1419 42.71 METPSGAHFYGLRPDGLLSSSASSPRSPSSSLSVPSGDHSLPKQPFVIGVTGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAKELEDVHKYNFDHPDAFDTEQLLDCIHKLKSGQSVHVPIYDFKTHQRCSDSFRQVNASDVIILEGILVFHDQCVRDLMNMKIFVDADADVRLARRISRDTVERGRDIQSVLEQYAKFVKPAFDNFILPSKKFADVIIPRGGENHVAIDLIVQHIRTKLGQHDLCKIYPNVNVIHSTFQIRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGYLPFLEKQVFTPTGSVYTGVEFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIKKGVPESSIIFLNLISAPEGIQCVCNRFPSLKIVTSEIDAKLNEEFRVIPGLGEFGDRYFGTDDYFVPIE* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1190772 1197806 - Vvi17g133 Vvi17g133 778830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g133 472 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 10 463 IPR029930 GO:0004849|GO:0044206
Vvi17g133 472 CDD UMPK 47 245 IPR000764 -
Vvi17g133 472 PANTHER URIDINE KINASE 10 463 - -
Vvi17g133 472 MobiDBLite consensus disorder prediction 1 38 - -
Vvi17g133 472 Pfam Phosphoribulokinase / Uridine kinase family 47 233 IPR006083 GO:0005524|GO:0016301
Vvi17g133 472 CDD PRTases_typeI 325 424 IPR000836 -
Vvi17g133 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 238 IPR027417 -
Vvi17g133 472 Gene3D - 249 464 IPR029057 -
Vvi17g133 472 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Vvi17g133 472 PRINTS Uridine kinase signature 45 62 - -
Vvi17g133 472 PRINTS Uridine kinase signature 75 86 - -
Vvi17g133 472 PRINTS Uridine kinase signature 120 135 - -
Vvi17g133 472 PRINTS Uridine kinase signature 177 187 - -
Vvi17g133 472 PRINTS Uridine kinase signature 191 202 - -
Vvi17g133 472 PRINTS Uridine kinase signature 213 226 - -
Vvi17g133 472 Pfam Uracil phosphoribosyltransferase 263 464 - -
Vvi17g133 472 MobiDBLite consensus disorder prediction 17 38 - -
Vvi17g133 472 TIGRFAM udk: uridine kinase 45 245 IPR000764 -
Vvi17g133 472 Gene3D - 42 248 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g133 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - vvi:100257659 919.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1191 Vvi17g133 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g565 ECH 33 186 PRT Gene Family AT1G80050 77.3 4.6e-63 237.7
Vvi4g497 ECH 33 185 PRT Gene Family AT1G80050 75.2 2.8e-60 228.4
Vvi18g660 . 30 179 PRT Gene Family AT1G80050 72.7 2.0e-58 222.2
Vvi9g565 ECH 1 148 PRT Gene Family AT5G11160 82.4 3.6e-66 248.1
Vvi4g497 ECH 1 148 PRT Gene Family AT5G11160 81.1 1.8e-65 245.7
Vvi18g660 . 8 145 PRT Gene Family AT5G11160 71.7 3.5e-53 204.9
Vvi18g660 . 1 182 PRT Gene Family AT1G27450 80.8 6.2e-80 293.9
Vvi9g565 ECH 11 183 PRT Gene Family AT1G27450 74.6 9.0e-71 263.5
Vvi4g497 ECH 11 182 PRT Gene Family AT1G27450 70.9 2.6e-70 261.9
Vvi3g59 . 90 466 PRT Gene Family AT2G16570 65.6 1.2e-171 600.1
Vvi3g59 . 88 466 PRT Gene Family AT4G34740 67.1 1.7e-176 616.3
Vvi3g59 . 19 439 PRT Gene Family AT4G38880 53.6 6.5e-138 488.0
Vvi18g660 . 1 182 PRT Gene Family AT1G27450 80.8 6.2e-80 293.9
Vvi9g565 ECH 11 183 PRT Gene Family AT1G27450 74.6 9.0e-71 263.5
Vvi4g497 ECH 11 182 PRT Gene Family AT1G27450 70.9 2.6e-70 261.9
Vvi9g565 ECH 33 186 PRT Gene Family AT1G80050 77.3 4.6e-63 237.7
Vvi4g497 ECH 33 185 PRT Gene Family AT1G80050 75.2 2.8e-60 228.4
Vvi18g660 . 30 179 PRT Gene Family AT1G80050 72.7 2.0e-58 222.2
Vvi18g660 . 3 97 PRT Gene Family AT4G22570 77.9 3.1e-39 157.9
Vvi9g565 ECH 6 100 PRT Gene Family AT4G22570 75.8 2.2e-37 151.8
Vvi18g660 . 1 96 PRT Gene Family AT4G12440 78.1 6.9e-38 153.3
Vvi9g565 ECH 1 148 PRT Gene Family AT5G11160 82.4 3.6e-66 248.1
Vvi4g497 ECH 1 148 PRT Gene Family AT5G11160 81.1 1.8e-65 245.7
Vvi18g660 . 8 145 PRT Gene Family AT5G11160 71.7 3.5e-53 204.9
Vvi18randomg64 . 1 184 PRT Gene Family AT1G71750 63.1 8.5e-67 250.4
Vvi19g781 . 16 470 PRT Gene Family AT1G55810 84.9 1.8e-226 781.9
Vvi17g133 ECH 44 466 PRT Gene Family AT1G55810 78.0 7.1e-194 673.7
Vvi14g1277 . 28 448 PRT Gene Family AT1G55810 76.8 3.5e-193 671.4
Vvi14g1190 ECH 3 267 PRT Gene Family AT1G55810 83.8 5.9e-132 468.0
Vvi17g131 ECH 56 312 PRT Gene Family AT1G55810 76.7 1.9e-114 409.8
Vvi14g1191 ECH 8 216 PRT Gene Family AT1G55810 58.6 9.3e-61 231.5
Vvi14g1189 . 765 896 PRT Gene Family AT1G55810 80.3 4.0e-56 216.1
Vvi14g1277 . 48 447 PRT Gene Family AT3G27440 81.8 6.8e-191 663.7
Vvi19g781 . 67 474 PRT Gene Family AT3G27440 76.2 2.0e-182 635.6
Vvi17g133 ECH 64 466 PRT Gene Family AT3G27440 74.9 1.8e-175 612.5
Vvi14g1190 ECH 3 267 PRT Gene Family AT3G27440 78.5 5.5e-124 441.4
Vvi17g131 ECH 56 312 PRT Gene Family AT3G27440 71.3 2.6e-105 379.4
Vvi14g1189 . 765 896 PRT Gene Family AT3G27440 77.3 7.1e-55 211.8
Vvi14g1191 ECH 69 226 PRT Gene Family AT3G27440 65.2 8.9e-50 194.9
Vvi17g133 ECH 1 466 PRT Gene Family AT3G27190 83.3 3.4e-226 781.2
Vvi19g781 . 3 469 PRT Gene Family AT3G27190 75.4 6.8e-211 730.3
Vvi14g1277 . 16 448 PRT Gene Family AT3G27190 76.3 2.8e-196 681.8
Vvi14g1190 ECH 3 268 PRT Gene Family AT3G27190 91.4 8.5e-145 510.8
Vvi17g131 ECH 56 312 PRT Gene Family AT3G27190 84.1 1.0e-126 450.7
Vvi14g1191 ECH 1 217 PRT Gene Family AT3G27190 74.3 1.2e-82 304.3
Vvi14g1189 . 765 897 PRT Gene Family AT3G27190 91.7 3.2e-67 253.1
Vvi8g796 . 43 276 PRT Gene Family AT3G53900 75.6 2.0e-104 375.9
Vvi19g781 . 1 470 PRT Gene Family AT4G26510 86.1 1.7e-238 822.0
Vvi17g133 ECH 1 466 PRT Gene Family AT4G26510 74.7 1.6e-204 709.1
Vvi14g1277 . 27 448 PRT Gene Family AT4G26510 77.3 6.0e-196 680.6
Vvi14g1190 ECH 3 267 PRT Gene Family AT4G26510 84.5 2.0e-135 479.6
Vvi17g131 ECH 56 312 PRT Gene Family AT4G26510 79.1 4.9e-121 431.8
Vvi14g1191 ECH 1 217 PRT Gene Family AT4G26510 61.9 1.4e-67 254.2
Vvi14g1189 . 765 896 PRT Gene Family AT4G26510 84.1 2.0e-61 233.8
Vvi17g133 ECH 1 466 PRT Gene Family AT5G40870 84.3 1.2e-228 789.3
Vvi19g781 . 3 472 PRT Gene Family AT5G40870 75.3 3.6e-212 734.6
Vvi14g1277 . 27 448 PRT Gene Family AT5G40870 76.1 1.7e-193 672.5
Vvi14g1190 ECH 3 267 PRT Gene Family AT5G40870 92.5 1.3e-145 513.5
Vvi17g131 ECH 56 312 PRT Gene Family AT5G40870 84.9 3.6e-127 452.2
Vvi14g1191 ECH 1 217 PRT Gene Family AT5G40870 75.7 4.9e-84 308.9
Vvi14g1189 . 765 896 PRT Gene Family AT5G40870 92.4 1.4e-67 254.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61