Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g135 ATGGAAGCTCTGGCTCTGCCCAATCCCAGTGAACTCTCTCCTCATCTCCTAGGGTTTCTGGACCATCGTTTTGGAACCCTTGAAGACCTTCTCACCGCCCCTAATCTCGCCGTTGAACTCTCCAAAATCTGTTCCGATTTGGACGCCGATCTCTCAGCCTTTCACCGGAACCTCAAAACCCTCATTGCCTCATGGACTCGCCGCTCGATTGCGGCGAAAACCGCCGTTCTCAGGCTCAACTATCGGTTGCAGAACCTCGGAGTTTTGGCGTCCCAGAACGACGTCGTTTTGAGCCAGGACCTCCCGCGTCTCGCCCGTGAACTGCTGCGAGTCGAGGCTGTTCGTGGGTACGCGGAGACTGCTCTGAGGTTGGAGGCGCTGATTGGGGATCTCGAGGACGTGATTTTCACGGAAAATGTTGCGGGTACTGTGAAGCAGGAGAGAGTGATCGGAGCTGTGAAGATCGTCGCTGATATCGATTCGGTATTGGCAAATGTCGCTGAATTTCAACCTCGGTGGCGAAGGCTTCTGAATTCAGTGGATGATAGAGTGGAGAAAGCTTTGAGCATTCTCCGGACGAGAGTTGTTGCGAGTCATAGAACTCTTCTTTCTTCATTGGGATGGCCGCCGAAGCTTTCGGTTTCGAAAATCGAAAATGGAGGAGTCTCGGCGATTCCGAATCCTCTGATGCTGATGAGAGGAGAGAAAAGGGAGAGTTATTCTCAGAGCTTTGTGGCTCTCTGTGCTTTGCAGCATGTGAGGGAAAAACGACGTCATAGTGATGATCTGGGGTTCAAAGCAAAGCTTTGGGCCATTGATGAACTGGTATCTCCTATTGCATCCAGAATTGAGTACCATTTCTCGAAGTGGGTTGATCAACCCGAGTTTATTTTCGCTCTTGTGCGTAAGATTACAAGCGATTTCGCTGTGGGTGTGGAAGAAGTCTTGCAGCCTCTGATTGATGAGGCTAGATTGGTGGGTTGTAGTGCCAAAGAAGCTTGGGTGTCCGCAATGGTGCAAATGCTTTCTGGGTTTTTGGGACACAGAGTATTCTCTGTTCTTGCTCAGAGGTACAAGGAGAAAGAGAAGAAATTGGAGGTTGGGTCTTCTTGGCTTCATTTGATTGACCTGATCGTTGCTTTCAATAAACAAATGCAATCACTTGTAAATTCAGAAAGTTATCTTCTAGCATCTGAGCTTGATAGAGCTTGGTTAGTTGAAAGCAAGAAGGGAGTTGATGTTCTTACTAACAAAGAAACCGAGCGATTTCTTTTGTCTACTAGGGAAGACCATAGGGCTCCGGTAATTGCAGAATCCGCTCTTAAAATGGCCTGGGAAATGATTGATCGAGGCCAAACCCTACCTGCCATTTTACCACGAATCCAGTTTATCAGGTCCACTGCAGCCAGATTTTTGTGGTACTTTCTCAATGTACTGCTGTTGAGATGGAAGGGAACAGACTTATCTCCTGAGAATCCTGATGATGAGACACTAATGAGAGCCTGTGGATTGATCAATGCTGCAGGATATTGTGAGTTTAAACTGCAGCAATGGAGCGATGATGTGAACTTTTTGGAGATGAAAATGGCTGAGACAGAATCAAAGAACCCTGTTAAAGACAACACTAATGATCATAGTTGCTTCTTTGATGAAGAAATCAAGAGCTTGGATGAGCTCGAGACTAATTGGCTTATGGAGATAGTTGCTAATCTTCTTCGCCAGTTTGAGTTGCTTTCCTGGGAATACATGGAAAACCTGAAACATTTTGACCAAGAGCAAAACCGTTTTTGTCCAACTACAACTTCAGCAGCCATGGATTTGGCTATATCCCATGATCTTATCGAGGCATTGGATGCTTTGAGGAGTCAGCTTCTTGTTATAGAGAGGAGTCTCAATCCAAGAGACTTCTTGGATCTATGGAGGAGTGTTGCAGAGGGGCTCGACCATTTTATCTTTAGCAGTATCTTTGGAATTGATATTGGATTCTCCGAAGAAGGTGTTAATCAGATTGGAGCTGATATGAGGGCATTGTTCTCTGTTTTTCAGCCGTTTTGTGCCCGGCCTGAAGCATTTTTCCCTTGTATTAGAGATTCTCTTAGGCTACTAGAGATGGATAAGGGAGAGGTGAAGTATTTGCAGGCAGTTTTGTCCAGTGATGAAAATAGAATAAAATGCTTGAGATCTTGTGGAATTTCACACGTATCTTTTGGTCAAGGCTTTGTTTCTTCCCTTGAAACCTCTCTCCATACGGGAACTTCTAGGGTTTTTTTTTTTTTTCATACGCTTTCTTGCAGACCAAACAAAATTGTTGCAGAATACATGGCTGCTTTTAGTGCACTTTCTAGCTGTCCGTACACTCTCCCTTACCGGCCAAAACCTAGCAACCGTTCCATTTTGTGCCGTATGGGCTCTGCTCCCACTTCTGTAGGTACAAGTGTATCTAAAGTACCTCGCAAGAGATCACGAAGAATGGAAGGGGTTAAAAAAAGCATGGAAGACTCTGTTCAGCGCAAAATGGAGCAGTTCTATGAAGGGTCCGAAGGCCCACCACTCCGTGTTCTTCCAATAGGTGGTCTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAATTATGATCGATATATTTTGATTGATGCTGGTGTCATGTTTCCGGACTATGATGAGCTTGGTGTTCAGAAAATTATACCTGATACCACATTCATCAAGAAATGGAGCCACAAAATTGAAGCAGTGGTCATAACACATGGTCATGAAGATCACATTGGTGCGTTGCCTTGGGTTATCCCAGCTTTGGATTCCCATACGCCAATATTTGCATCATCTTTCACAATGGAGCTTATTAAAAAGCGTTTGAAGGAGTTTGGAATCTTTGTTCCATCTAGGCTTAAGGTGTTTAGAACAAGGAAGAAATTCATTGCTGGTCCATTTGAAATAGAGCCTATCAGGGTCACCCACTCTATTCCTGATTGTTGTGGATTGGTTATACGCTGTGCTGATGGTACAATTCTTCATACTGGGGACTGGAAGATTGATGAGTCCCCCTTAGATGGGAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAGGGAGTAACTTTGATGATGAGTGACTCAACCAATGTACTCTCCCCTGGAAGGACAATTAGTGAGAGTGTTGTAGCAGATGCACTATTGAGACATATTTCATCTGCTAAAGGAAGGGTTATAACTACTCAGTTTGCATCAAATATACATCGCCTTGGAAGTGTGAAAGCTGCAGCTGATTTAACAGGCAGAAAGTTGGTGTTTGTTGGTATGTCCTTGAGGACATATCTGGATGCAGCATGGAAGGATGGGAAGGCACCAATTGATCCATCGACATTGGTGAAAGTGGAAGATATTGATGCCTATGCTCCAAAGGATTTGCTTATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCTGCTCTGAATCTTGCATCATATGGAAGTAGCCATTCCCTCAAATTGAGCAAGGAAGATATAATTTTATATTCAGCCAAGGTAATCCCGGGTAATGAAACTCGTGTAATGAAGATGCTAAACCGCGTATCAGAGATTGGATCAACTATCATAATGGGTAAGAATGAGGGGCTGCACACTTCTGGTCATGGATATCGTGGAGAATTGGAGGAAGTACTCAAGATTGTGAAGCCACAACACTTCTTACCCATTCATGGAGAACTCTTGTTCCTGAAAGAGCATGAATTGCTTGGAAAATCAACTGGCATTCGTCACACTACAGTTATAAAGAATGGGGAGATGCTTGGAGTTTCACACTTGAGGAACAGAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTTAAAAGGGAAAATAAGAATCACCACACGATGCTTATGGCTTGACAAAGGGAAACTTCTAGATGCACTCCACAAAGCTGCCCATGCCGCACTTTCTAGCTGCCCAGTGAATTGTCCTTTAGCTCACATGGAAAGGACTGTGTCTGAGGTGTTGAGGAAGATGGTAAGGAAGTATAGCAGTAAGAGGCCTGAAGTTATTGCAATTGCTATTGAAAACCCATCAGCGGTTCTTGCTGGCGAGCTCAATGCAAGACTATCTGGAAAGTCGCATGTTGGTTTTGGCGCATCAGCACTAAGAGAAGTTGTTGATGAATATCCTAAAAAGAGACGGATGAACAGGATGCAAGAGGAGGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACACTGAAGATTTCTGGAAATCATTCATTGACTCATCATCACCTGTTGACCAATTAATGGAAGACAAAATCAGTTTTGTTCCACAAGGCTATCCAATGGAGCTCAAGAAAGATTCTGAAATCAGAGAAGTTGACTCTTCTGAAGTGCCAAAATCTCAACCGAAGTCTCCCAAGCCCATGAAACGAAACAAATGGAAACCTGAAGAGGTTAAGAAACTTATTAGCATGCGTGGGGAATTGCATAGCAAATTCCAAGTTGTGAAAAGGCGAATGGCTCTCTGGGAAGAGATAGCTACAAACCTGTTGGCTGATGGAATCGATCGAACTCCAGGGCAGTGTAAATCCTTATGGACATCTCTGGTTCAGAAATATCAGGAAATCAAGGGTGATAAGAAAAGCAGGAAAAGTTGGCCACACTTTGAGGACATGAATGAAATTTTATCTGATTTAGAGCCAATGGCACCAAAATGA 4980 43.73 MEALALPNPSELSPHLLGFLDHRFGTLEDLLTAPNLAVELSKICSDLDADLSAFHRNLKTLIASWTRRSIAAKTAVLRLNYRLQNLGVLASQNDVVLSQDLPRLARELLRVEAVRGYAETALRLEALIGDLEDVIFTENVAGTVKQERVIGAVKIVADIDSVLANVAEFQPRWRRLLNSVDDRVEKALSILRTRVVASHRTLLSSLGWPPKLSVSKIENGGVSAIPNPLMLMRGEKRESYSQSFVALCALQHVREKRRHSDDLGFKAKLWAIDELVSPIASRIEYHFSKWVDQPEFIFALVRKITSDFAVGVEEVLQPLIDEARLVGCSAKEAWVSAMVQMLSGFLGHRVFSVLAQRYKEKEKKLEVGSSWLHLIDLIVAFNKQMQSLVNSESYLLASELDRAWLVESKKGVDVLTNKETERFLLSTREDHRAPVIAESALKMAWEMIDRGQTLPAILPRIQFIRSTAARFLWYFLNVLLLRWKGTDLSPENPDDETLMRACGLINAAGYCEFKLQQWSDDVNFLEMKMAETESKNPVKDNTNDHSCFFDEEIKSLDELETNWLMEIVANLLRQFELLSWEYMENLKHFDQEQNRFCPTTTSAAMDLAISHDLIEALDALRSQLLVIERSLNPRDFLDLWRSVAEGLDHFIFSSIFGIDIGFSEEGVNQIGADMRALFSVFQPFCARPEAFFPCIRDSLRLLEMDKGEVKYLQAVLSSDENRIKCLRSCGISHVSFGQGFVSSLETSLHTGTSRVFFFFHTLSCRPNKIVAEYMAAFSALSSCPYTLPYRPKPSNRSILCRMGSAPTSVGTSVSKVPRKRSRRMEGVKKSMEDSVQRKMEQFYEGSEGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEFGIFVPSRLKVFRTRKKFIAGPFEIEPIRVTHSIPDCCGLVIRCADGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISSAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDIILYSAKVIPGNETRVMKMLNRVSEIGSTIIMGKNEGLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYNDGDKAFGTSTELCIDERLRIASDGIIVISMEILRPQVVDGVTEKSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSEVLRKMVRKYSSKRPEVIAIAIENPSAVLAGELNARLSGKSHVGFGASALREVVDEYPKKRRMNRMQEEAGGHIQVENTSQQDLKGDDGVEVQRLLSEEETNSSSSNSAEIFSPDSGDTEDFWKSFIDSSSPVDQLMEDKISFVPQGYPMELKKDSEIREVDSSEVPKSQPKSPKPMKRNKWKPEEVKKLISMRGELHSKFQVVKRRMALWEEIATNLLADGIDRTPGQCKSLWTSLVQKYQEIKGDKKSRKSWPHFEDMNEILSDLEPMAPK* 1660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1201557 1215948 - Vvi17g135 Vvi17g135 778832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g135 1659 Gene3D - 855 1267 IPR036866 -
Vvi17g135 1659 SMART Lactamase_B_5a 863 1060 IPR001279 -
Vvi17g135 1659 ProSiteProfiles Myb-like domain profile. 1560 1624 IPR001005 -
Vvi17g135 1659 MobiDBLite consensus disorder prediction 1451 1503 - -
Vvi17g135 1659 MobiDBLite consensus disorder prediction 1482 1500 - -
Vvi17g135 1659 Pfam RINT-1 / TIP-1 family 270 718 IPR007528 GO:0006888|GO:0006890|GO:0070939
Vvi17g135 1659 Pfam Beta-lactamase superfamily domain 874 1010 IPR001279 -
Vvi17g135 1659 CDD RNaseJ_MBL-fold 854 1265 - -
Vvi17g135 1659 Gene3D - 1568 1629 - -
Vvi17g135 1659 MobiDBLite consensus disorder prediction 809 831 - -
Vvi17g135 1659 ProSiteProfiles RINT1/TIP20 domain profile. 187 712 IPR007528 GO:0006888|GO:0006890|GO:0070939
Vvi17g135 1659 MobiDBLite consensus disorder prediction 1543 1567 - -
Vvi17g135 1659 CDD GT1 1566 1631 - -
Vvi17g135 1659 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 1208 1248 IPR011108 -
Vvi17g135 1659 Coils Coil 515 535 - -
Vvi17g135 1659 Gene3D - 1052 1202 IPR042173 -
Vvi17g135 1659 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 548 683 IPR042044 -
Vvi17g135 1659 Pfam Myb/SANT-like DNA-binding domain 1565 1649 IPR044822 -
Vvi17g135 1659 PANTHER RIBONUCLEASE J 766 1659 - -
Vvi17g135 1659 SUPERFAMILY Metallo-hydrolase/oxidoreductase 851 1265 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g135 - - - vvi:100268000 1704.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14173 PF04437 RINT1_TIP1 3.50E-25 No_clan Vvi TF