Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g139 ATGTTAGGCTATAAAACGACGACGTTCGATGAAACGTGGAACAATTTGAAGCTTGAGAAGGGTCCGTTGTCTCACCGACGAATTCGAATATTCTCCTTTGGTTTCACTACACGTGTCGTTCTTCAAATACCCTATAGGCCCCTCTCCTCCGCCATGGCGGGACTCTGCCGCCTGAAATTGGCGGCGCCACTGCTGCTCCACCTTCGGAGACTCACTCTCAGCCGATCTTTCGGTGCAGCCGCAGCAGCTCAACCACAATTCAACGTCGATTACCATCCCGAGAGCGAGTACGAGCCCCTCCGTGGATCGGCTGCGGCGCCGATGGTAGATTCTGAAGGTTCGGCGCCGAGCAGAGGAGTGCAGTGGGTGTTCATAGGAAACCCCGGCGCAAAGAAGCACGTGTACGCAGGGAAACTCTCAAAGCTTCTACAGGTTCCTCACATTTCAATCGCGAGCCTCGTTCGGCAAGATCTTCATCCTCGTTCTTCACTTTACGAACAGATTGCAAATGCAGTGAACAATGGTAAACTTGTTCCGGAGAATGTCATATTTGGATTGTTGTCGGAGAGGCTGGAAGCTGGATATTACAGAGGTGAGTGCGGGTTCATTCTTGATGGAATTCCTCGATCTGTGAGCCAAGCGGAGATCCTCGACCAACTTGCTGTCATTGATCTGGTTGTGAATTTTAAATGCGCTGATGATTTCTTTGTTGAAGACCGAGAAAGTGGCATTTCTTCCCATTTCACTACTAGCAAGGAAGGTGCTTGGAAGGGAACAGTTCGGGTCTATTTGGAGCAGATCAAGCCACTAGAAGATTACTACAGAAAACAGAAGAAGCTTCTCAACTTTCAAGTAGGCAATGCACCTGGGGAAACCTGGAAAGGGCTATTGGCCGCATTACATCTCAAGCATGTAGATGCTAAGCATTCTTCACAGAAATTGACTGCCGGATTCACCAGTCATTGA 966 49.28 MLGYKTTTFDETWNNLKLEKGPLSHRRIRIFSFGFTTRVVLQIPYRPLSSAMAGLCRLKLAAPLLLHLRRLTLSRSFGAAAAAQPQFNVDYHPESEYEPLRGSAAAPMVDSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAVNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNFKCADDFFVEDRESGISSHFTTSKEGAWKGTVRVYLEQIKPLEDYYRKQKKLLNFQVGNAPGETWKGLLAALHLKHVDAKHSSQKLTAGFTSH* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1243375 1246011 - Vvi17g139 Vvi17g139 778836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g139 321 ProSitePatterns Adenylate kinase signature. 202 213 IPR033690 -
Vvi17g139 321 PANTHER ADENYLATE KINASE 7, MITOCHONDRIAL ISOFORM X1-RELATED 58 320 - -
Vvi17g139 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 300 IPR027417 -
Vvi17g139 321 Pfam Adenylate kinase 125 278 - -
Vvi17g139 321 Gene3D - 106 306 IPR027417 -
Vvi17g139 321 CDD ADK 121 291 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g139 321 PRINTS Adenylate kinase signature 123 136 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g139 321 PRINTS Adenylate kinase signature 202 218 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g139 321 PRINTS Adenylate kinase signature 265 279 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g139 321 PANTHER NUCLEOTIDE KINASE 58 320 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g139 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - vvi:100261051 496.508
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1198 Vvi17g139 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 1 6