Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g141 ATGGGCTATTTGAGTTTGCTTTTGCTGATATTTCTTTCATGGAATTTCTTCATCTTGGGTACCCATCAACTGCAATCCTCTCAAACCCAAGTGCTTCTTCAGCTAAGAAAGCAGCTTGAGTATCCAGTTCAGTTAGAGATTTGGAAGGACCATACCTTAGATTTCTGTTATTTATCATCTTCCACACAAGTAAACATCACCTGCCAAGACAGCTTTGTCACAGGGATCAAGATTATGGGTGATAAGACTGTTAAGGATAGTAATTTTGATGGGTTTGCCATTCCAACTGTAACTCTATCTGGGGCCTTCTCTATGGATTCTTTTGTGACAACTCTGGCCAGGCTAACCAGCTTGAGAGTTCTTAGCCTGGTGTCTTTGGGCATTTGGGGTCCACTGCCAGACAAAATTCATCGGTTATCTTCACTTGAATACTTGGATTTGAGTTCCAATTTTCTCTTTGGTTCAGTTCCTCCTAAGATCTGTACAATGGTGAAGCTCCAAGCTCTTTCACTTGATGGCAATTACTTCAATGGTACAGTGCCTGATTGCTTGGATTCACTATCGAATCTAACAGTTCTGAGCCTGGGGAACAATCGTTTGAATGGAACACCCCCAGAAGCACTTTTCTCTTTGCCCAACATCAGTTACTTGAATTTGGCATCAAACACTTTGAGTGGATCGCTTTCCAACCATATACACTGCAGCAGTGAGCTTAGCTTTGTCGACATATCAAATAATAAGTTAACAGGTGGATTGCCTTCATGTTTGAGCACTGCATTAGATAAGAGAGTTGTTAATTCTGATGGGAATTGTCTGTCCATCGGTTTCCAGCACCAGCATCCTGACTCTTACTGCATGGCAGTCCCAGTAAAGAAGAAAGAATCGAGAAGCAAAGATATGGGAATATTAGTGGCTGTCATTGGGGGGGTCTTTGTTGCTACTCTGCTTCTGGTTTTTGGCTGTTTCTTTGTGTGTAAAAGATGTTGTTCACGGAGTATATCAGAGCAGCATTTATTGCATAAGACCGTGCAAGAGAACTCGACAACTGGGTTATCCTCTGAGCTTCTAACAAATGCAAGGTTTATCCCTCAAGTAGCCAAATTGGGAACAGAAGGTGTTCCAGTGTGCCGGGTGTTTTCTTTGGAAGAGTTAAGGGAAGCTACAAACAACTTTGATCGGTCTACCTTTATGGGTGATGGTTCAAATGGGAAGCTTTACAAGGGACGATTGGAGAATGGAACCCAAGTAGCTATAAGGTGTCTGCCTTTGTCAAAGAAGTATACAATCCGAAATCTTAAGCTGAGGTTGGATTTGATTGCAAGGCTTCGCCACACACATTTGGTTTGCCTTTTGGGGCATGGTATTGATACTGGTGGTCGAGATGATTCCAGTGTATACAAAGTTTTTCTCATTTACGAGTATCTGCCTAATGGGAACTTTCGCAGCCATCTCTCTGAGAATGGTCCAGAAAAGGCTCTGAAATGGTCAGAGAGATTGTCTGTTCTAATTGGAGTTGCCAAGGCTTTGCACTTTCTGCACACTGGAGTTATTCCTGGTTTCTTCAACAATCGACTGAAGACGAATAATATCTTGCTGAATGAGCATGGGATGGCAAAGTTGAGTGACTATGGGCTCTCCATTATCTCAGAAGAGAATGACAAACATGGGGAAAAAGGGGATGGCCTGAAGTCATGGCAAATGACAAAATTAGAAGATGATGTGTATAGCTTCGGATTAATATTGCTTGAGTCATTGGTTGGACCGTCGGTTTCTGCAAGAAGGGAAGCGTTTCTACAAAATGAAATGGCATCTTTTGGGAGCCAGGACGGTCGGAGAAGAATAGTGGACCCAACTGTACTTGCCACTTGTTCACAAGAGTCTCTATCCATTGCCATTTCCATAACAAACAAATGCATTTCTCTTGATTCCTCGACCCGCCCATCTGCGGAGGATATCCTCTGGAACTTGCAGTATGCAGCTCAAATCCAAACCACAGCGGACGGCGATCAGAGGACGGACACGGCACCGTATCACTGA 2037 43.25 MGYLSLLLLIFLSWNFFILGTHQLQSSQTQVLLQLRKQLEYPVQLEIWKDHTLDFCYLSSSTQVNITCQDSFVTGIKIMGDKTVKDSNFDGFAIPTVTLSGAFSMDSFVTTLARLTSLRVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSVPPKICTMVKLQALSLDGNYFNGTVPDCLDSLSNLTVLSLGNNRLNGTPPEALFSLPNISYLNLASNTLSGSLSNHIHCSSELSFVDISNNKLTGGLPSCLSTALDKRVVNSDGNCLSIGFQHQHPDSYCMAVPVKKKESRSKDMGILVAVIGGVFVATLLLVFGCFFVCKRCCSRSISEQHLLHKTVQENSTTGLSSELLTNARFIPQVAKLGTEGVPVCRVFSLEELREATNNFDRSTFMGDGSNGKLYKGRLENGTQVAIRCLPLSKKYTIRNLKLRLDLIARLRHTHLVCLLGHGIDTGGRDDSSVYKVFLIYEYLPNGNFRSHLSENGPEKALKWSERLSVLIGVAKALHFLHTGVIPGFFNNRLKTNNILLNEHGMAKLSDYGLSIISEENDKHGEKGDGLKSWQMTKLEDDVYSFGLILLESLVGPSVSARREAFLQNEMASFGSQDGRRRIVDPTVLATCSQESLSIAISITNKCISLDSSTRPSAEDILWNLQYAAQIQTTADGDQRTDTAPYH* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1252339 1260721 - Vvi17g141 Vvi17g141 778838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g141 678 Gene3D Phosphorylase Kinase; domain 1 366 474 - -
Vvi17g141 678 SUPERFAMILY L domain-like 97 258 - -
Vvi17g141 678 SMART LRR_typ_2 139 163 IPR003591 -
Vvi17g141 678 SMART LRR_typ_2 187 210 IPR003591 -
Vvi17g141 678 Pfam Protein kinase domain 394 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g141 678 ProSiteProfiles Protein kinase domain profile. 391 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g141 678 Pfam Leucine Rich Repeat 141 158 IPR001611 GO:0005515
Vvi17g141 678 Gene3D Transferase(Phosphotransferase) domain 1 475 675 - -
Vvi17g141 678 PANTHER OS07G0166700 PROTEIN 3 194 IPR045272 GO:0004714|GO:0006468
Vvi17g141 678 PANTHER OS07G0166700 PROTEIN 185 674 IPR045272 GO:0004714|GO:0006468
Vvi17g141 678 Gene3D Ribonuclease Inhibitor 25 284 IPR032675 -
Vvi17g141 678 Pfam Leucine rich repeat 188 248 IPR001611 GO:0005515
Vvi17g141 678 SUPERFAMILY Protein kinase-like (PK-like) 373 656 IPR011009 -
Vvi17g141 678 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 185 674 - -
Vvi17g141 678 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 3 194 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1200 Vvi17g141 ECH
Vvi1g1117 Vvi17g141 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76298 PF00069 Pkinase 2.70E-19 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g141 - - vvi:100243936 1040.41