Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g143 ATGGCGACCCTTTCGGCGAATTTGGAGGATATTCCTTCTGTGGATCTCATGACGGAGCTTCTTCGTCGCATGAAGTGCTCTACCAAGCCTGACAAACGCCTCATTCTAATCGGTCCACCTGGATCAGGAAAAGGTACCCAATCTCCAATTATAAAGGATGAATACTGCTTGTGCCACTTGGCTACTGGTGATATGTTAAGAGCAGCTGTTGCTGCTAAAACCCCTCTTGGTATTAAGGCTAAAGAGGCTATGGAGAAGGGTGAACTTGTTTCTGATGATCTGGTTGTTGGCATTATAGATGAAGCAATTAAGAAGCCTTCATGTCAGAAAGGCTTCATTCTTGATGGATTTCCGAGGACTGAGGTCCAAGCACAAAAGCTTGATGAGATGCTTGAAAAGCAGGGTGTTAAAGTTGATAAGGTGCTGAACTTTGCAATTGATGATGGGATCTTGGAAGAGAGAATTACGGGTCGTTGGATGCACCCATCTAGTGGTAGGACTTACCACACAAAATTTGCACCTCCGAAGGTTCATGGCATTGATGATGTCACTGGTGAACCTTTGATTCAGCGTAAAGATGATACTGCTGCTGTTCTCAAGTCAAGGCTGGAGGCATTTCACAGGCAAACAGAACCAGTAATTGACTATTACACCAAGAAGGGCATCGTCGCTAACCTTCATGCAGAGAAATCCCCGAAGGAGGTCACGACTGAGGTTCAGAAGGCCCTTTCTTCGTGA 738 45.53 MATLSANLEDIPSVDLMTELLRRMKCSTKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAIKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGVKVDKVLNFAIDDGILEERITGRWMHPSSGRTYHTKFAPPKVHGIDDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIDYYTKKGIVANLHAEKSPKEVTTEVQKALSS* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1280790 1285398 + Vvi17g143 Vvi17g143 778840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g143 245 TIGRFAM adk: adenylate kinase 33 243 IPR006259 GO:0004017|GO:0005524|GO:0016776
Vvi17g143 245 ProSitePatterns Adenylate kinase signature. 112 123 IPR033690 -
Vvi17g143 245 CDD ADK 33 235 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PANTHER ADENYLATE KINASE 4-LIKE 5 245 - -
Vvi17g143 245 Pfam Adenylate kinase 36 221 - -
Vvi17g143 245 Pfam Adenylate kinase, active site lid 158 193 IPR007862 GO:0004017
Vvi17g143 245 Gene3D - 4 244 IPR027417 -
Vvi17g143 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 243 IPR027417 -
Vvi17g143 245 PANTHER NUCLEOTIDE KINASE 5 245 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 Hamap Adenylate kinase [adk]. 32 244 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PRINTS Adenylate kinase signature 35 48 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PRINTS Adenylate kinase signature 63 77 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PRINTS Adenylate kinase signature 112 128 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PRINTS Adenylate kinase signature 191 206 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi17g143 245 PRINTS Adenylate kinase signature 208 222 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g143 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - vvi:100245612 488.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1172 Vvi17g143 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46