Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g146 ATGCTGTCTTGCAGTAAACGTGATCACCGAGAAATTGGAGGTTGTGAGATCAGATTTCCCAAGAGATTTTATGTTTGGAACAGCTACCTCTGCTGTGCAGGTACATTCCTCATTCCAGCTCTCCTACATTTCCTCATTCTGAATCCTTTCCACGAGAAGCTCAGCAGATTCATGCTGAAGGAAGCTTCTTTCTTTACATTTACCCTGAAGGGCTGCAGAAACTCTTGGAATACATCAAGGACAGATACCAAAACCCGAAAATCTACATCACTGAAAATGGGATTAATGAGGCTATGTAAAGCCTTGGAAAATGGGGTGGATGTGAAGGGCTATTTCTACTGGTCTCTGTTCTACAGCTTTGAATTCGGATCAGGATACAACTTAAGATACGGATTTTACTACATAGATTACAAGGACAACCTAAAGGGCATCATCCCCAAAGAGTCTGCCAAGTGGGTATCTGATTTTCTCAAGAGGCAGTGA 483 42.44 MLSCSKRDHREIGGCEIRFPKRFYVWNSYLCCAGTFLIPALLHFLILNPFHEKLSRFMLKEASFFTFTLKGCRNSWNTSRTDTKTRKSTSLKMGLMRLCKALENGVDVKGYFYWSLFYSFEFGSGYNLRYGFYYIDYKDNLKGIIPKESAKWVSDFLKRQ* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1307824 1308955 - Vvi17g146 Vvi17g146 778843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g146 160 PANTHER GLYCOSYL HYDROLASE 89 159 IPR001360 GO:0004553|GO:0005975
Vvi17g146 160 Pfam Glycosyl hydrolase family 1 91 159 IPR001360 GO:0004553|GO:0005975
Vvi17g146 160 Gene3D Glycosidases 71 160 - -
Vvi17g146 160 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 89 159 - -
Vvi17g146 160 PRINTS Glycosyl hydrolase family 1 signature 129 141 IPR001360 GO:0004553|GO:0005975
Vvi17g146 160 PRINTS Glycosyl hydrolase family 1 signature 105 122 IPR001360 GO:0004553|GO:0005975
Vvi17g146 160 SUPERFAMILY (Trans)glycosidases 95 159 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g146 - - K01188 qsu:112010098 90.8929
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .