Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g149 ATGGCGGAAATGAATGGGAACCACTGGATCGATCCGAAGAGCGGGTTCTCCCCTACAACCAAGACCTACCATAGCCTCCGACCTCCGGTACCTTTTCCGCCGAAGCACCGCCCTCTTTCCCTCGCCGAGTACGTCATCTCCCTCCTCCGCTCCGCCCCTGACTCACCGCTCGAAACCACCAACGTTCTTATCGACGCTTCCTCCGACTACCGCCTCTCGTATTCTCAGTTCCTCCGGCAAGTCCAATCCTTGGCCGCCTCTCTTCAGCGCATCACCGGCCTTTCCAAAGGCGATACTGCTTTCATTCTCTGCCCTCCTTCTCTCAAAATCCCTGTTATCTACTTTTCTCTCCTCTCTCTCGGCGTCACCATTTCTCCCACCAATCCGCTCGGCTCCGACTCCGAAGTTTCTCACCAGATTCACCTCTGCAAACCTGCGATTGCATTCGCTTCTTCGAAAACTGCTCACAAGCTGCCGAGCCTGCGGCTCGGCACGGTGCTTGTTGATTCGCTGGAGTTCGACTCTATGATGACAGAGAATGGAGCAGGTTATGGTAAACGAGTGGAGGTGAGTCAGTCTGACCCGGCCGCGATTCTCTATTCGTCCGGGACCACGGGACGAGATGGGCCGCGCCCAGTGTCGCTGTTCACGCTGCCGCTATTTCACGTGTTCGGATTTTTCATGCTTGTGAGGGCAGTCTCGTTGGCGGAGACCTTGGTTCTGATGGAGAGGTTTGATTTCGAGAATATGTTGAAGGCCGTAGAGAAGTACCGAATCACGTATATGCCGGTGTCGCCGCCCCTTGTGGTGGCGCTCGCAAAGTCGGAGTTCGTCGGCAAGTACGACCTTAGCTCGCTTCAGTTGCTTGGATCAGGCGGGGCGCCGCTGGGAAAGGAGGTTTCCGAGCGGTTCTCCGCACGATTCCCCAATGTACAGATGGTACAGGGATATGGTTTGACTGAAAGTGGGGGAGGGGCAGCAGGGATGGCAGACCTTGATGAGGCTAAGCGGCATGGATCTGTTGGTCGCCTAATGCATGATATGGAAGCCAAGATAGTTGATCCTAAAACTGGAGAGGCCTTACCACCTGGCCAGCAAGGGGAGCTGTGGTTGCGCGGTCCAACAATCATGAAAGGTTATGTAGGAGATGATGAGGCAACTGCTGCAACCTTGGATCAAGAGGGCTGGTTAAAAACTGGCGATCTTTGTTACTTTGACTCTGATGGATTCCTATTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGCATATCAGGTTCCTCCTGCTGAGTTGGAACATTTACTGCAATCCAATCCAGAAATTGCTGATGCTGCTGTAATCCCGTATCCTGATGAAGAAGCAGGACAGATACCAATGGCCTTTGTGGTGAGAAAACCGGGAAGCAGCATCACTGAGGCTCAAGTTATGGAATTCATTGCAAAACAGGTTGCACCATACAAGAAGATACGGCGCGTAGCTTTTGTCAACTCCATTCCAAAATCTCCTGCAGGAAAGATCTTACGAAGAGAACTGGTCAATCATGCGCTCTCTAAACCTAGACTATGA 1572 52.16 MAEMNGNHWIDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNVLIDASSDYRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGVTISPTNPLGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSMMTENGAGYGKRVEVSQSDPAAILYSSGTTGRDGPRPVSLFTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAKSEFVGKYDLSSLQLLGSGGAPLGKEVSERFSARFPNVQMVQGYGLTESGGGAAGMADLDEAKRHGSVGRLMHDMEAKIVDPKTGEALPPGQQGELWLRGPTIMKGYVGDDEATAATLDQEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSITEAQVMEFIAKQVAPYKKIRRVAFVNSIPKSPAGKILRRELVNHALSKPRL* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1326720 1332448 + Vvi17g149 Vvi17g149 778846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g149 523 Gene3D - 33 207 IPR042099 -
Vvi17g149 523 Gene3D - 208 418 IPR042099 -
Vvi17g149 523 Pfam AMP-binding enzyme C-terminal domain 432 507 IPR025110 -
Vvi17g149 523 SUPERFAMILY Acetyl-CoA synthetase-like 29 519 - -
Vvi17g149 523 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 25 514 - -
Vvi17g149 523 Pfam AMP-binding enzyme 64 207 IPR000873 -
Vvi17g149 523 Pfam AMP-binding enzyme 211 423 IPR000873 -
Vvi17g149 523 CDD 4CL 33 513 - -
Vvi17g149 523 Gene3D - 419 519 IPR045851 -
Vvi17g149 523 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 514 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1210 Vvi17g149 ECH
Vvi1g1169 Vvi17g149 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g149 K01904 - vvi:100268159 1007.67