Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g151 ATGAACTGTGATAGGAAGAGGAAGTTTTCGCCTATTGTGTGGAACGCGGAGAAGGAAGTGAGGATTTCGTCTAAGAATGGGGTTGTATCTATGAGCACTGCGTTGTCTCATCCTAAATTGTTGGGTGAAGTTGTTTCAGATGAGGTTGTTGCGGTGCACAGTGATGCTGATCGGATTCAGTGCTTGCAGTCTTCTATTATAGAGTCCCATGTGGTGAGCGGCTCTGCTGAAACTGCTGTTGTGGAGCCTCCTGCATGTTTGTCTTCTCTGATGCCTGGTCAGCGCTGTGGGAGGAGTGGTGAAGAAGTGGAGCAGCTGGAGGAGGAAGTTGTTTGTTCCTGGAATATCGCCACATCTAGGTGGGCATCTGAAAGTGATTCTCCAAGAGAAAAATGTTTCTCTGATAATGGAAATATGCCGAAGCGAAGTAAAATGAGTTCTCCTATGGATTCACCTTCAAGAACTCTATTAGATGGAAAGGCATCCAGTCCTGAGAGTGGGGAGTTTCAAAGAGAAGACTCAGAAGGAGATAGGGCTGAATCTTCTTCGGGCTTGGATTCTGAGGATGGTAATGAGGTTCATCTTCCAGTAGAGTCGCTGCCTCCCCCACAAAGGAGTGTAAACATGCTTCAGGAATGTAGAAGTGTGTTTGAATATGATAGGCTCAATAAAATAAACGAAGGTGCATATGGTGTAGTGTATAGAGCCAGGGACAAAAAAACGGGGGAAATCGTGGCATTGAAGAAAATGAAAATGAAGATAGCAGAAACAGATGGTTTCCCTATGTCAGCTTTGAGGGAAATAAACATTCTCTTGTCTTTTCATCACCCCTCGATTGTGGATGTTAAAGAAGTTGTTATGGATGACTTTGGTACTGTTTACATGGTTATGGAGTACATGGAACATGACCTTAAGCGGCTGATTGAATTGAAGAAACGGTCTTTCTCTTTAAGTGAAGTTAAAGGCCTGATGCTACAGCTGTTGGAGGGTGTCCAGCATCTTCATCATAATTGGGTGCTACACAGGGATTTGAAGACATCAAATCTTCTTTTGAACGACAATGGTGAGTTGAAAATCTGTGACTTTGGGTTGTCTCGCCAGTATGCAAGCCCATCTAAACCATATACTCAGTTGGTGGTCACTCTATGGTACAGGGCTCCTGAACTTCTGCTGGGAACAAAACAATACTCAACGGCAATTGACATGTGGTCTGTGGGTTGTATAATGGCTGAACTTTTAGCGAAAGAGCCACTATTCCAAGGGAAAACTGAATTGGATCAGCTTGACAAGATTTTTAAGATTCTTGGAACACCCAATAAAACGATTTGGCCAGGGGTTTCCAATTTGCCTGGATTCAAAGCCAACTTTGTCAAGCAACCGTATAATCTGTTGAGGAAGAAATTTCCAGCTACATCTTTCACTGGATTTCCAGTTCTCTCTGATTCAGGGTTTGACCTGTTGAGCAAACTTCTAACCTACGACCCTGAGAAGCGAATAACCGCAGAAGCTGCATTGGACCATGACTGGTTTCATGAAGTACCCCTTCCCAAATGTGAAGGTTTCATGCCTTTTTTCCCTGCTCAACATGCTCAGGACAGGTAG 1602 43.88 MNCDRKRKFSPIVWNAEKEVRISSKNGVVSMSTALSHPKLLGEVVSDEVVAVHSDADRIQCLQSSIIESHVVSGSAETAVVEPPACLSSLMPGQRCGRSGEEVEQLEEEVVCSWNIATSRWASESDSPREKCFSDNGNMPKRSKMSSPMDSPSRTLLDGKASSPESGEFQREDSEGDRAESSSGLDSEDGNEVHLPVESLPPPQRSVNMLQECRSVFEYDRLNKINEGAYGVVYRARDKKTGEIVALKKMKMKIAETDGFPMSALREINILLSFHHPSIVDVKEVVMDDFGTVYMVMEYMEHDLKRLIELKKRSFSLSEVKGLMLQLLEGVQHLHHNWVLHRDLKTSNLLLNDNGELKICDFGLSRQYASPSKPYTQLVVTLWYRAPELLLGTKQYSTAIDMWSVGCIMAELLAKEPLFQGKTELDQLDKIFKILGTPNKTIWPGVSNLPGFKANFVKQPYNLLRKKFPATSFTGFPVLSDSGFDLLSKLLTYDPEKRITAEAALDHDWFHEVPLPKCEGFMPFFPAQHAQDR* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1342829 1345896 - Vvi17g151 Vvi17g151 778848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g151 533 Pfam Protein kinase domain 219 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g151 533 Gene3D Transferase(Phosphotransferase) domain 1 302 521 - -
Vvi17g151 533 SMART serkin_6 219 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g151 533 MobiDBLite consensus disorder prediction 165 193 - -
Vvi17g151 533 PANTHER CELL DIVISION PROTEIN KINASE 140 533 - -
Vvi17g151 533 MobiDBLite consensus disorder prediction 139 160 - -
Vvi17g151 533 ProSiteProfiles Protein kinase domain profile. 219 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g151 533 Gene3D Phosphorylase Kinase; domain 1 204 301 - -
Vvi17g151 533 MobiDBLite consensus disorder prediction 125 206 - -
Vvi17g151 533 SUPERFAMILY Protein kinase-like (PK-like) 214 516 IPR011009 -
Vvi17g151 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Vvi17g151 533 CDD STKc_CDC2L1 213 510 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vvi17g151 533 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 140 533 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g151 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - vvi:100250978 1051.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1152 Vvi17g151 ECH
Vvi1g1111 Vvi17g151 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0210 Cone19ag0197 . . . . . Blo15g00063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76299 PF00069 Pkinase 8.70E-77 CL0016 Vvi PK