Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g152 ATGTTAGGCATTGGAACATATGGTTATACTGCCCCTATGGCCAAAAAGACTGTCGTGGGCTATGAAGCTCCCGATGGGGTTGATATCAGGGGCCGATATGATGAAGAACTTGCAAAGATTTTGACTAAGGATGCCCTGCAGTTTGTGGCTGATCTGCAGAGGGAGTTTTGGAGTCAAATTAAGTATGCAATGGAGTGTAGGAGGGAGGCGAAGAGGCGGGAAGGTGACTGGGTGTGTGCGCCTGTGCCACCGGCTGTCGCTGATCGGAAGGTGGAGATTACCGGTCCCGTGGAAAGGAAGATGATCATCAATGCTCTCAACTCCGGTGCTAAAGTTTTCATGGCTGATTTTGAAGATGCGCTCTCACCAAGTTGGGAGAATCTGATGAGAGGGCAAGTTAACTTGAAGGATGCTGTGGACGGGACTATAAGCTTCCATGACCAGGCCAGGAACCGGGTTTACAGGCTCAATGACCAGACAGCCCAGCTTTTTGTCCGCCCGCGAGGTTGGCATCTGCCTGAGGCTCATATTCTCATTGATGGCGAGCCTGCAACAGGTTGCCTTGTGGATTTTGGCCTCTACTTCTTCCATAACTACGCAACCTTCCGCCGGAGACAGGGTGAAGGGTTTGGGCCTTTTTTCTACCTCCCTAAAATGGAGCACTCAAGGGAAGCTAAAATATGGAACTGTGTGTTTGAGAGGGCAGAGAAAATGGCTGGAATAGAAAGAGGAAGCATCAGGGCCACAGTCCTAATAGAAACACTACCAGCTGTTTTTCAAATGGATGAAATCCTCTATGAGCTCAGAGATCACTCTGTTGGTTTGAATTGTGGCAGATGGGATTACATTTTCAGCTATGTCAAAACCTTCCAGGGTCACTCTGATCGGTTGCTGCCGGACAGGGTTCAGGTTGGGATGACTCAACACTTCATGAAGAGCTACTCTGATCTTCTCATTAGGACGTGCCACAGGCGCGGAGCCCATGCAATGGGCGGCATGGCGGCTCAGATTCCAATTAGAGATGACCCGGCAGCAAATGAGGCAGCTCTTGATCTGGTGAGGAAGGACAAGCAGAGAGAAGTGAGGGCAGGGCATGATGGAACGTGGGCAGCCCACCCTGGGCTCATTCCGGCCTGCATGGAAGTCTTCAACAACAACATGGGCAATGCAGCGAATCAGATCCAAACCATGAAGCGGGAGGATGCAGCAAACATAACCGAAGAGGACCTCATACAGAGGCCTAGAGGGGTCCGAACCATGGAGGGCCTGCGCCTAAACACCCGGGTCGGGATCCAGTACTTGGCCGCATGGCTCACTGGAACTGGCTCAGAGATGGCCAGGATTGAGAGAGAGGTTGGGCGTGAGAAGTTCAAGAAGGGAATGTACAAGGAGGCCTGCAAGATCTTCACCAGGCAATGCACAACCCCAACTCTAGATGATTTTCTGACTCTAGATGCATATAACCATATCATAAGACTTCTAGACCAGGCGTAG 1494 51.0 MLGIGTYGYTAPMAKKTVVGYEAPDGVDIRGRYDEELAKILTKDALQFVADLQREFWSQIKYAMECRREAKRREGDWVCAPVPPAVADRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENLMRGQVNLKDAVDGTISFHDQARNRVYRLNDQTAQLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFFHNYATFRRRQGEGFGPFFYLPKMEHSREAKIWNCVFERAEKMAGIERGSIRATVLIETLPAVFQMDEILYELRDHSVGLNCGRWDYIFSYVKTFQGHSDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGAHAMGGMAAQIPIRDDPAANEAALDLVRKDKQREVRAGHDGTWAAHPGLIPACMEVFNNNMGNAANQIQTMKREDAANITEEDLIQRPRGVRTMEGLRLNTRVGIQYLAAWLTGTGSEMARIEREVGREKFKKGMYKEACKIFTRQCTTPTLDDFLTLDAYNHIIRLLDQA* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1351756 1355016 + Vvi17g152 Vvi17g152 778849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g152 497 Pfam Malate synthase 72 443 IPR001465 GO:0004474|GO:0006097
Vvi17g152 497 PANTHER MALATE SYNTHASE 443 491 - -
Vvi17g152 497 PANTHER MALATE SYNTHASE 11 442 - -
Vvi17g152 497 CDD malate_synt_A 40 490 IPR006252 GO:0004474|GO:0006097
Vvi17g152 497 Coils Coil 380 400 - -
Vvi17g152 497 ProSitePatterns Malate synthase signature. 269 284 IPR019830 GO:0004474|GO:0006097
Vvi17g152 497 Gene3D Malate synthase, domain 3 23 416 IPR046363 -
Vvi17g152 497 SUPERFAMILY Malate synthase G 20 491 IPR011076 GO:0003824
Vvi17g152 497 Gene3D Malate synthase, domain III 442 491 IPR044856 -
Vvi17g152 497 PIRSF Malate_synth 19 444 IPR006252 GO:0004474|GO:0006097
Vvi17g152 497 PIRSF Malate_synth 441 492 IPR006252 GO:0004474|GO:0006097
Vvi17g152 497 PANTHER MALATE SYNTHASE 443 491 IPR006252 GO:0004474|GO:0006097
Vvi17g152 497 PANTHER MALATE SYNTHASE 11 442 IPR006252 GO:0004474|GO:0006097
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g152 K01638 aceB, glcB; malate synthase [EC:2.3.3.9] - vvi:100261216 965.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g152 . . . . . Bpe13g00208 . . Cmo13g00822 . . . . . . Cpe20g00320 . . . . . . . . . . . . . . . Cone2ag0959 . . . Lsi02g00483 . . . . . Bda11g01607 . . . . . . . . Cma13g00791 . Car13g00639 . . . . . . . . . . Cla03g00340 Cam03g0355 Cec03g0346 Cco03g0361 Clacu03g0356 Cmu03g0961 Cre03g0654 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012250 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29