Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g154 ATGGCTAAAACACGGAAAGTTTCTAAGGGACATTCTTCGTCTGGGTTTGTTCCTGATTATCGTCATGCTGTTGAGACCATGGGTGAATCAGAAGGGTTTGGGAGCTCAGGTCGTGTTGACACTGAGATGACTGCTTCAGAGGATTCCTGTGTCCCCAAAAGGAAATGCATCAGTCTGAATGTGGATGGTTATGATAGTTTTTGTGTCCCTGTACAAGTCTTGTCTTTATCAAAGATGTCTCGGGCAGAAAGGAGGGATTTAGAGCGGAGGTTGAAAATGGAACTTCAACAGGTTAGGGCTTTTCAGAAGAAAATTGCCTCTCTTTACAAAATTCAGAAGTCATCTGAAGCATCCACTCATCAGCGGAAGAAACGACCTCCTCCTCCTGGACGAAATGTGCCTAAAATGAAACGTGGTTTGTCTGGGCGGTTTGAATCAGTGAAGCAGGCTGCACCCCCGGGCACTTCGAATTCCATGTTGATGAAACAGTGTGAGACATTGTTGAGCCGGTTGATGACTCATCAATTTGGTTGGATTTTCAACAATCCTGTTGATGTCGTGGAGTTAAAGATTCCAGATTACTTCACTGTTATTAAGCATCCAATGGACTTGGGCACAATCAAAAGTAAGATGGCTTCAGGTGAATATTTGAGCCCATTTGATTTTGCTGCAGATGTGAGGCTTACTTTCTCAAATGCAATGACTTACAACCCACGGGGAAATGACGTTCATTTCATGGCTGAGACACTGAATAAATTTTTTGAAATGAGGTGGAAGCCTATAGAGAAGAAGCTTCCAAAAGTTGCACCGACAGATCACAAGATAAAGATGGAGCCAAACAAAAGGATCATGACCAAAGAGGAGAGGCATAATTTGGGCACAGAATTGGAAACTTTGCTTGGAGAACTGCCTGATGACATTGTTGATTTCCTAAAAGAGCAGAGTTTCAATGAAAATCAAGCCAGTGAAGATGAAATTGAAATTGATATTGATGCTCTAAGTGATGATACATTGTTCACACTGCGGAAGCTTTTAGATGGCTATTTGCTGGAGAAGCAGAAAAACCTGACAAAAACTGAACCTTGTGAAATGGAGCTTCGTAATGAGTCGGGGTTCAGCAATTCATCAATGCAACCATGCAAAGGCAATGACCATCTGGACGAGGATGTAGATATTGGTGGGAATGATCCTCCTACGTCAAGCTACCCACCAATTGAGATAGAAAAGGATGCAGCCCATAGAAACAGTAGATGCAGTAGTTCAAGTACTTCCAGTAGTGATTCGGGCTCTTCATCAAGCGACTCAGACTCAGGCAGTTCTTCAGGTGGTGAATCAGATGGTGCCAAAGCTTCAGTCCCTGTTACTAGCACAAAGGAAACTGTAGCTTCTGGAGCCGATTTAGACCCAAAGAAAAGCGATCTTGGCGAAGACATTGGAAATGAAGCTTTGAATATTCCTTGCAATGTCGATCCAAATTTAGAGTCTAAGCCAATTTCTGCGGAGGCTGATGGCCATCAAGAGGGGGAGAGTGCTCCATCTGAGAGGCAAGTCTCCCCCGAAAAGCTTTATCGTGCTGCTTTATTGAGGAGTCGCTTTGCTGACACCATACTAAAAGCTAGAGAAAAAACGCTTGAAAAGGGTGAAAAGGGGGATCCTGAGAAACTACGACTCGAGAGAGAGGAACTTGAAAGACGGCAAAAAGAAGAGAAAGCAAGGTTACAAGCAGAGGCCAAGGCAGCCGAAGAGGCTAGAAAGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCTAAGAGGAAGAGGGAACTTGACAGAGAAGCTGCACGTCAGGCATTGCAACAGATGCAGAAGACTGTTGATATCAATGAGAATTGTCTGTTTTTGAAAGATTTAGAAATGCTAAGGGCTGCTCCCGAACCTTTACCGAGCTTGGATGAGAGAAGCCCAGATCAATCCCCAAATTGCCTGGGTAGTTTCAAACTCCAGGGAAGTAATCCCTTGGAACAACTTGGACTATACATGAAGATGGATGATGAAGAGGAGGAAGAAGTTGAGCCCCAATGCATTCCAGGTCCGGGAAATGATGTAGAGGAAGGAGAAATTGATTGA 2103 44.03 MAKTRKVSKGHSSSGFVPDYRHAVETMGESEGFGSSGRVDTEMTASEDSCVPKRKCISLNVDGYDSFCVPVQVLSLSKMSRAERRDLERRLKMELQQVRAFQKKIASLYKIQKSSEASTHQRKKRPPPPGRNVPKMKRGLSGRFESVKQAAPPGTSNSMLMKQCETLLSRLMTHQFGWIFNNPVDVVELKIPDYFTVIKHPMDLGTIKSKMASGEYLSPFDFAADVRLTFSNAMTYNPRGNDVHFMAETLNKFFEMRWKPIEKKLPKVAPTDHKIKMEPNKRIMTKEERHNLGTELETLLGELPDDIVDFLKEQSFNENQASEDEIEIDIDALSDDTLFTLRKLLDGYLLEKQKNLTKTEPCEMELRNESGFSNSSMQPCKGNDHLDEDVDIGGNDPPTSSYPPIEIEKDAAHRNSRCSSSSTSSSDSGSSSSDSDSGSSSGGESDGAKASVPVTSTKETVASGADLDPKKSDLGEDIGNEALNIPCNVDPNLESKPISAEADGHQEGESAPSERQVSPEKLYRAALLRSRFADTILKAREKTLEKGEKGDPEKLRLEREELERRQKEEKARLQAEAKAAEEARKKAEAEAAAEAKRKRELDREAARQALQQMQKTVDINENCLFLKDLEMLRAAPEPLPSLDERSPDQSPNCLGSFKLQGSNPLEQLGLYMKMDDEEEEEVEPQCIPGPGNDVEEGEID* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1370138 1381495 + Vvi17g154 Vvi17g154 778851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g154 700 Gene3D - 96 276 IPR036427 GO:0005515
Vvi17g154 700 MobiDBLite consensus disorder prediction 541 601 - -
Vvi17g154 700 Coils Coil 84 104 - -
Vvi17g154 700 SUPERFAMILY Bromodomain 151 266 IPR036427 GO:0005515
Vvi17g154 700 PRINTS Bromodomain signature 175 188 IPR001487 GO:0005515
Vvi17g154 700 PRINTS Bromodomain signature 191 207 IPR001487 GO:0005515
Vvi17g154 700 PRINTS Bromodomain signature 207 225 IPR001487 GO:0005515
Vvi17g154 700 PRINTS Bromodomain signature 225 244 IPR001487 GO:0005515
Vvi17g154 700 ProSiteProfiles NET domain profile. 274 356 IPR027353 -
Vvi17g154 700 SMART bromo_6 153 263 IPR001487 GO:0005515
Vvi17g154 700 MobiDBLite consensus disorder prediction 112 156 - -
Vvi17g154 700 MobiDBLite consensus disorder prediction 637 700 - -
Vvi17g154 700 CDD Bromo_plant1 160 258 IPR037377 -
Vvi17g154 700 Gene3D - 277 355 IPR038336 -
Vvi17g154 700 Coils Coil 557 616 - -
Vvi17g154 700 Pfam Bromodomain extra-terminal - transcription regulation 284 346 IPR027353 -
Vvi17g154 700 PANTHER TRANSCRIPTION FACTOR GTE8 5 270 - -
Vvi17g154 700 PANTHER TRANSCRIPTION FACTOR GTE8 271 685 - -
Vvi17g154 700 Pfam Bromodomain 164 248 IPR001487 GO:0005515
Vvi17g154 700 PANTHER TRANSCRIPTION FACTOR GTE10 271 685 - -
Vvi17g154 700 PANTHER TRANSCRIPTION FACTOR GTE10 5 270 - -
Vvi17g154 700 MobiDBLite consensus disorder prediction 645 663 - -
Vvi17g154 700 MobiDBLite consensus disorder prediction 369 519 - -
Vvi17g154 700 ProSiteProfiles Bromodomain profile. 172 244 IPR001487 GO:0005515
Vvi17g154 700 MobiDBLite consensus disorder prediction 416 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g154 - - - vvi:100249253 1207.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1219 Vvi17g154 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47