Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g159 ATGTTAGGCTGCAGCAACAGCGATAATAACAACAACTCTTCTGCTGAGCCTTTTGCTAGCTTGGAAAATGGAAGTAATAGTAAGAGGAAGCGGCGGCCGGCGGGGACTCCAGATCCAGACGCGGAGGTGGTGTCTCTTTCGCCCAAAACTCTATTGGAATCGGATCGATACATTTGTGAGATCTGCAACCAGGGGTTTCAGAGAGACCAGAACCTTCAGATGCACCGGCGACGCCATAAGGTGCCATGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAGGAAGCGGGTGTTTGTGTGCCCGGAGCCCAGCTGCTTGCACCATGACCCCTGCCACGCACTGGGTGATCTGGTTGGAATCAAGAAGCACTTCAGAAGAAAGCACAGTAATCACAAGCAGTGGGTCTGTGAGAAATGCAACAAGGGCTATGCTGTTCAATCGGATTACAAAGCCCACCTCAAAACCTGCGGCACCAGAGGCCATTCTTGCGACTGCGGCCGTGTTTTCTCCAGAGTCGAGAGCTTCATTGAACATCAAGATGCTTGCAATATGGGTCACCTACGGCCGGAATCGCAGTTGCTGCAGCCGGCGGCGTGCTTGTCTCGAACTGCCTCTAGCCCCAGCCCATCTAGTGAGACCAATTTCAGTGTACCTCCTTGGTCTGCTGTTAACCACACCGAATCCCCTCTGCAATACCAGTGA 702 53.42 MLGCSNSDNNNNSSAEPFASLENGSNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRPESQLLQPAACLSRTASSPSPSSETNFSVPPWSAVNHTESPLQYQ* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1436682 1438596 + Vvi17g159 Vvi17g159 778856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g159 233 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g159 233 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 9 227 - -
Vvi17g159 233 MobiDBLite consensus disorder prediction 1 46 - -
Vvi17g159 233 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Vvi17g159 233 MobiDBLite consensus disorder prediction 202 233 - -
Vvi17g159 233 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Vvi17g159 233 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vvi17g159 233 Gene3D Classic Zinc Finger 34 98 - -
Vvi17g159 233 PANTHER OS03G0310200 PROTEIN 9 227 IPR039288 GO:0009630
Vvi17g159 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vvi17g159 233 SMART c2h2final6 98 128 IPR013087 -
Vvi17g159 233 SMART c2h2final6 57 79 IPR013087 -
Vvi17g159 233 SMART c2h2final6 134 161 IPR013087 -
Vvi17g159 233 Gene3D Classic Zinc Finger 119 194 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1107 Vvi17g159 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14174 PF00096 zf-C2H2 0.005 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g159 K25871 - vvi:100260988 451.825