Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g162 ATGGTCAGGAGATCAGCTCCCATTTGGTCTTGCTCGAGCTGTTATTCAATTTTCCATTTGAATTGTATCAAGAAATGGGCCCGGGCGCCTACCTCTACTGATTTTTCTGTAGAGAAGAATCAGGGGGTCAACTGGCGATGCCCTGGATGTCAATCAGTGCAGCTCACAGCTTCAAAGGAGATTCGGTATGTTTGCTTCTGTGGAAAGAGGTCTGATCCGCCTTCTGATTTGTATTTGACGCCCCATTCTTGTGGAGAGCCTTGTGGGAAGCCACTCAATCGAGAGATTATAGGTTCTGGTGAGAGTAATGAGGATTTTTGCCCCCATGTCTGTGTCTTGCAATGCCACCCAGGTCCATGCCCTCCGTGTAAGGCTTTTGCACCGCCTCGGTTGTGCCCTTGTCGGAAGAAAATAATTACAACACGATGCTCTGATCGGAAATCTGTTCTTACTTGTGGTCAGCGTTGTGATAAACTCCTCGAATGTGGGCGTCACCGTTGTGAGCGCATGTGCCATGTTGGTGCTTGTGATCCTTGTCAGGTTCTGGTCAATGCCTCTTGCTTTTGCAAGAACACGGTGGAGGTTGTTCTTTGTGGGTCCATGGCTGTGAAGGGAGAACTAAAATCAGAGGATGGTGTTTTCTCATGTCGTTGGATCTGTGGAAAGAAGCTTTTCTGTGGAAATCACGATTGTGATGAAATTTGCCATCCAGGGCCATGTGGGGATTGCAACTTAATGCCAAGCAGGATTAGGACATGCTATTGCGGTAAAACATCATTGCAGGAGGAACGGCGTAGCTGTTTGGACCCAATTCCAACCTGTCTTCAGATCTTCTCTGAAGCTTCCATTATCCAAAAGTTGCCAGTACCACTTCAACCTGTGGAAGCAAATGGCAGGAAAATTCCTCTTGGACAGAGGAAGCTTGCTTGTGATGATGAATGTGCAAAACAGGAACGGAAACGAGTTCTTGCAGATGCTTTTGATATCACCCCCCCAAACTTGGATGCCCTTCATTTTGGTGAGACTTCTGTTGTTTCTGAATTGCTTGCAGATCTTTTTAGGCGTGATCCAAAGTGGGTGTTGTCTGTGGAAGAAAGATGCAAGTTTTTGGTCCTAGGGAAAACCAGAGGAACTACCAGCAGTCTTAGGGTTCACGTTTTCTGTCCAATGCTGAAGGAAAAGAGAGATGCTGTAAGGCTGATAGCTGAGAGGTGGAAGCTTTCAGTTAATTCTGCTGGGTGGGAGCCAAAGCGTTTTATTGTTGTTCATGTTACGCCCAAATCCAAAGCCCCAGCTCGTGTGCTTGGCGCTAAGGGTTCCACCCCCTTAAATGTGTTAAATCCTCCGGTTTTTGATCCATTGGTAGATATGGATCCCAGGCTTGTTGTTTCTTTACTTGATTTGCCAAGGGACGCAGATATAAGTGCATTGGTTCTGAGGTTTGGTGGGGAGTGTGAATTAGTTTGGTTGAATGACAAGAATGCGCTGGCCGTGTTTAGTGATCCAGCCCGAGCAGCAACTGCGATGAGGAGGTTAGATCATGGATCAGTGTATCATGGTGCTGTTGTGATCCCTCAAAATGGCATTGCACCAGTGGCTTCACAAGGTGCCAATGCCTGGGGAGGATCAGCAGGGGGAATGGCCAAGGAGGGCCGTAATCAATGGAAGAAGGCAGTGGTTCAGGAGTCTGGTTGGAGTGAGAGTTCCTGGGGTGGTGAAGACTGGTCAGCTGGTTCTGTGGATCTGCAGGCATCTGTTTGGAAAGGGAAGGAATCCCCCATTGTTGCTTCTGTAAACCGATGGAATGTTTTAGAGCCTGAATTGGTTTCAAGCTCATCTACCTCTTCTGTCAAAACCGAGGATTCCGGAAAAAGAGTGGGAAATCAATCTGTGCCCGCAGATGCATCAGAAGTAGTAGATGACTGGGAAAAGGCTTATGAATGA 1944 47.43 MVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSTDFSVEKNQGVNWRCPGCQSVQLTASKEIRYVCFCGKRSDPPSDLYLTPHSCGEPCGKPLNREIIGSGESNEDFCPHVCVLQCHPGPCPPCKAFAPPRLCPCRKKIITTRCSDRKSVLTCGQRCDKLLECGRHRCERMCHVGACDPCQVLVNASCFCKNTVEVVLCGSMAVKGELKSEDGVFSCRWICGKKLFCGNHDCDEICHPGPCGDCNLMPSRIRTCYCGKTSLQEERRSCLDPIPTCLQIFSEASIIQKLPVPLQPVEANGRKIPLGQRKLACDDECAKQERKRVLADAFDITPPNLDALHFGETSVVSELLADLFRRDPKWVLSVEERCKFLVLGKTRGTTSSLRVHVFCPMLKEKRDAVRLIAERWKLSVNSAGWEPKRFIVVHVTPKSKAPARVLGAKGSTPLNVLNPPVFDPLVDMDPRLVVSLLDLPRDADISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLDHGSVYHGAVVIPQNGIAPVASQGANAWGGSAGGMAKEGRNQWKKAVVQESGWSESSWGGEDWSAGSVDLQASVWKGKESPIVASVNRWNVLEPELVSSSSTSSVKTEDSGKRVGNQSVPADASEVVDDWEKAYE* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1497930 1501792 + Vvi17g162 Vvi17g162 778859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g162 647 MobiDBLite consensus disorder prediction 608 647 - -
Vvi17g162 647 SMART znfxneu3 162 181 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 SMART znfxneu3 226 245 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 SMART znfxneu3 107 125 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 MobiDBLite consensus disorder prediction 608 626 - -
Vvi17g162 647 CDD RING-CH-C4HC3_NFX1 1 51 - -
Vvi17g162 647 CDD NF-X1-zinc-finger 84 145 - -
Vvi17g162 647 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 279 631 IPR034078 GO:0003700
Vvi17g162 647 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 1 277 IPR034078 GO:0003700
Vvi17g162 647 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 279 631 - -
Vvi17g162 647 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 1 277 - -
Vvi17g162 647 Pfam NF-X1 type zinc finger 162 180 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 Pfam NF-X1 type zinc finger 109 124 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 Pfam NF-X1 type zinc finger 226 243 IPR000967 GO:0005634|GO:0008270
Vvi17g162 647 CDD NF-X1-zinc-finger 152 200 - -
Vvi17g162 647 CDD NF-X1-zinc-finger 216 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g162 K12236 NFX1; transcriptional repressor NF-X1 - vvi:100268010 750.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14176 PF01422 zf-NF-X1 3.60E-06 No_clan Vvi TF