Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g166 ATGCCGAATCCTTTTGTTATCGGGTCCGGTCCGCCCGGGACCAATTATACCGTCATGAAGAGGGCTTTTGATGAAGGTTGGGGTGCTGTGATCGCCAAAACGGTGTCTCTGGATGCTGCCAAAGTTATAAATGTAACTCCTCGGTATGCCCGGCTACGAGTAGGAGCAAATGGCTCAGCCAAAGGACAAATTATTGGGTGGGAAAATATTGAACTCATAAGCGATCGGCCTCTTGAAACAATGTTGAAAGAGTTCAAGCAATTAAAAGAAGAGTATCCTGATAGAATACTTATTGCTTCAATCATGGAGGAATATGATAAAGCAGCCTGGGAAGAACTTATCGACCGAGTTGAGCAAACTGGAATTGATGCCCTTGAGATCAATTTTTCATGTCCTCATGGTATGCCAGAGAGAAAAATGGGTGCTGCAGTTGGGCAAGATTGTGCACTTTTGGAGGAGGTTTGTGGATGGATAAATGCAAAAGCCACTGTTCCGGTGTGGGCAAAAATGACTCCTAACATCACTGACATTACACAGCCAGCTAGGGTGGCTCTGAGTTCAGGATGTGAGGGGGTGTCTGCTATTAACACGATCATGAGTGTGATGGGGATCAATCTCAACACCTTACGTCCTGAGCCTTGTGTTGAGGGATACTCAACTCCTGGGGGCTATTCTTGCAAGGCAGTCCATCCCATAGCACTGGGAAAAGTGATGAGCATTGCAAAAATGATGAAGGCTGAATTTGGTGAGGACTACTCGCTCTCTGGTATTGGAGGTGTTGAGACAGGTGGTGATGCTGCCGAATTTATTCTTCTTGGAGCAAACACTGTTCAGGTATGCACTGGTGTTATGATGCACGGTTATGGCCTTGTGAAGAAACTTTGCTCTGAGCTAAAAGATTTCATGAAAATGCACAATTTCTCATCCATAGAAGATTTCAGAGGGGCTTCTCTTGAATACTTTACAACGCACACAGATTTGGTACAAAGGCAGCAAGAAGCAATTCGGCAGAGGAAAGCCATCAGGCAAGGGTTACAGTCTGACAAAGACTGGACAGGAGATGGCTTTGTGAAAGAAAGTGAGAGCATGGTTTCTAACTGA 1101 45.32 MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRVGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYDKAAWEELIDRVEQTGIDALEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVALSSGCEGVSAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSCKAVHPIALGKVMSIAKMMKAEFGEDYSLSGIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLCSELKDFMKMHNFSSIEDFRGASLEYFTTHTDLVQRQQEAIRQRKAIRQGLQSDKDWTGDGFVKESESMVSN* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1518273 1526623 - Vvi17g166 Vvi17g166 778863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g166 366 PANTHER DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] 1 366 IPR044512 GO:0006210|GO:0006212
Vvi17g166 366 Gene3D Aldolase class I 1 308 IPR013785 -
Vvi17g166 366 SUPERFAMILY FMN-linked oxidoreductases 2 317 - -
Vvi17g166 366 TIGRFAM pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 2 316 IPR005720 GO:0005737|GO:0016627
Vvi17g166 366 PANTHER BNAA01G27800D PROTEIN 1 366 - -
Vvi17g166 366 CDD DHPD_FMN 1 298 - -
Vvi17g166 366 Pfam Dihydroorotate dehydrogenase 2 302 IPR005720 GO:0005737|GO:0016627
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g166 K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] - vvi:100249021 740.339
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g166 . . Bda06g00868 . . . . Bma12g01285 . Cmo18g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00733 Chy12g01380 Cme12g01813 . Blo15g00017 . . Bpe07g01089 . . . . . . . Cma18g00085 Car13g00813 Car18g00074 Cpe09g01105 . Bhi08g01329 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008474 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34