Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g168 ATGGCAGTAGTCCGAGACCGCCGGCAGCTCAACCTCCGCCTCCCCTTGCCTGAAATCTCCGAGCGCCGTCCCCGATTCCCACTTCCCCTTCCTCCCACCAATCTCCCGTTCTCCTCCGGCGCCACTACCGCCGCCGACCTTGAGAAGATCGAAGTGATCGGCCACGGGAACGGCGGCACCGTCTACAAGGTCCAGCACAAGCGCACTGCAGCGAACTACGCGCTCAAGGTGGTCCACGGCGACTGCGACCCCACCGTCCGCCGTCAGCCCTCCGGTGACATCGCGATTTTAATGGAGTACATGGACGCCGGTACCTTAAAAACCCTCCTGGAAACCAAAGGCACTTTCTCGGAAGTGGATCTCGCTGGCGTCGCCGGTCAGGTGCTGAACGGCCTCAGTTACCTCCACAGCCACAAGATCATCCACAGAGACATCAAACCCGCAAATCTTTTGGTGAACGGGAACATGGAGGTGAAGATCGCCGATTTCGGAGTGAGCAAGATCATGCGCCGCATGCTCGACTCTTGCAACTCCTACGTGGGCACCTGCGCCTACATGAGCCCGGAGCGGTTCGACCCCGACTCCCACGGCTCCAATTACGACGGCTACTCCGGCGATATCTGGAGCTTAGGTCTCACCCTATTAGAACTCTACGTCGCCGATGATCTGATCTGA 675 59.41 MAVVRDRRQLNLRLPLPEISERRPRFPLPLPPTNLPFSSGATTAADLEKIEVIGHGNGGTVYKVQHKRTAANYALKVVHGDCDPTVRRQPSGDIAILMEYMDAGTLKTLLETKGTFSEVDLAGVAGQVLNGLSYLHSHKIIHRDIKPANLLVNGNMEVKIADFGVSKIMRRMLDSCNSYVGTCAYMSPERFDPDSHGSNYDGYSGDIWSLGLTLLELYVADDLI* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1537422 1538551 + Vvi17g168 Vvi17g168 778865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g168 224 Gene3D Transferase(Phosphotransferase) domain 1 98 223 - -
Vvi17g168 224 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 89 - -
Vvi17g168 224 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 92 219 - -
Vvi17g168 224 ProSiteProfiles Protein kinase domain profile. 47 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 Gene3D Phosphorylase Kinase; domain 1 36 97 - -
Vvi17g168 224 SMART serkin_6 47 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 Pfam Protein kinase domain 93 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 89 - -
Vvi17g168 224 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 92 219 - -
Vvi17g168 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vvi17g168 224 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Vvi17g168 224 SUPERFAMILY Protein kinase-like (PK-like) 46 218 IPR011009 -
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 98 111 IPR001245 GO:0004672|GO:0006468
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 205 224 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g168 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - vvi:100254418 409.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g168 . . . . . . . . Cmo13g01011 . . . . . . Cpe20g00165 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01809 . . . . . . . . Cma13g00976 . . . . . Bhi08g01328 . . . . . . Cla04g01028 Cam04g1070 Cec01g1584 Cco01g1633 Clacu04g1097 Cmu04g1081 Cre01g1381 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g140 . 27 352 MAP Kinase Kinase Gene Family AT4G26070 69.9 2.1e-134 475.7
Vvi11g254 . 26 350 MAP Kinase Kinase Gene Family AT4G26070 57.0 7.7e-108 387.5
Vvi11g140 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 71.3 1.6e-134 476.1
Vvi11g254 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.2e-106 382.1
Vvi14g1310 . 35 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.3e-228 789.3
Vvi9g955 . 91 343 MAP Kinase Kinase Gene Family AT1G51660 53.7 6.8e-86 314.7
Vvi9g955 . 136 335 MAP Kinase Kinase Gene Family AT3G21220 78.0 7.6e-87 317.8
Vvi11g254 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 83.1 3.7e-169 591.3
Vvi11g140 . 7 351 MAP Kinase Kinase Gene Family AT5G56580 60.1 3.8e-118 421.8
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 51.4 1.4e-60 230.3
Vvi9g955 . 135 316 MAP Kinase Kinase Gene Family AT1G18350 53.8 3.2e-52 202.6
Vvi17g168 . 1 219 MAP Kinase Kinase Gene Family AT1G73500 55.5 9.5e-65 244.2
Vvi9g955 . 135 313 MAP Kinase Kinase Gene Family AT1G73500 54.7 3.8e-53 205.7
Vvi9g955 . 136 313 MAP Kinase Kinase Gene Family AT1G32320 50.5 1.7e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76300 PF00069 Pkinase 3.20E-37 CL0016 Vvi PK