Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g168 ATGGCAGTAGTCCGAGACCGCCGGCAGCTCAACCTCCGCCTCCCCTTGCCTGAAATCTCCGAGCGCCGTCCCCGATTCCCACTTCCCCTTCCTCCCACCAATCTCCCGTTCTCCTCCGGCGCCACTACCGCCGCCGACCTTGAGAAGATCGAAGTGATCGGCCACGGGAACGGCGGCACCGTCTACAAGGTCCAGCACAAGCGCACTGCAGCGAACTACGCGCTCAAGGTGGTCCACGGCGACTGCGACCCCACCGTCCGCCGTCAGCCCTCCGGTGACATCGCGATTTTAATGGAGTACATGGACGCCGGTACCTTAAAAACCCTCCTGGAAACCAAAGGCACTTTCTCGGAAGTGGATCTCGCTGGCGTCGCCGGTCAGGTGCTGAACGGCCTCAGTTACCTCCACAGCCACAAGATCATCCACAGAGACATCAAACCCGCAAATCTTTTGGTGAACGGGAACATGGAGGTGAAGATCGCCGATTTCGGAGTGAGCAAGATCATGCGCCGCATGCTCGACTCTTGCAACTCCTACGTGGGCACCTGCGCCTACATGAGCCCGGAGCGGTTCGACCCCGACTCCCACGGCTCCAATTACGACGGCTACTCCGGCGATATCTGGAGCTTAGGTCTCACCCTATTAGAACTCTACGTCGCCGATGATCTGATCTGA 675 59.41 MAVVRDRRQLNLRLPLPEISERRPRFPLPLPPTNLPFSSGATTAADLEKIEVIGHGNGGTVYKVQHKRTAANYALKVVHGDCDPTVRRQPSGDIAILMEYMDAGTLKTLLETKGTFSEVDLAGVAGQVLNGLSYLHSHKIIHRDIKPANLLVNGNMEVKIADFGVSKIMRRMLDSCNSYVGTCAYMSPERFDPDSHGSNYDGYSGDIWSLGLTLLELYVADDLI* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1537422 1538551 + Vvi17g168 Vvi17g168 778865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g168 224 Gene3D Transferase(Phosphotransferase) domain 1 98 223 - -
Vvi17g168 224 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 89 - -
Vvi17g168 224 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 92 219 - -
Vvi17g168 224 ProSiteProfiles Protein kinase domain profile. 47 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 Gene3D Phosphorylase Kinase; domain 1 36 97 - -
Vvi17g168 224 SMART serkin_6 47 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 Pfam Protein kinase domain 93 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g168 224 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 89 - -
Vvi17g168 224 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 92 219 - -
Vvi17g168 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vvi17g168 224 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Vvi17g168 224 SUPERFAMILY Protein kinase-like (PK-like) 46 218 IPR011009 -
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 98 111 IPR001245 GO:0004672|GO:0006468
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Vvi17g168 224 PRINTS Tyrosine kinase catalytic domain signature 205 224 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76300 PF00069 Pkinase 3.20E-37 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g168 K20604 - vvi:100254418 409.068