Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g169 ATGGTATGGACGCATTTCATACTGATATGGGCAGTCTACTCGTCATTCTTCACACCAATGGAGTTCGGATTCTTCAGAGGCTTGCCGGAGAATCTTTTCCTTCTCGACATTGCCGGCCAGTTGGCGTTTCTCGTCGACATGGTCGTCCGCTTCTTCGTCGCCTTTCGTGACACTCAGTCATACACTACTGTCGACAGCCACAAGCGCATTGCCCTCAGGTACTTGAAATCTCGGTTTGTGGTCGATTTTCTCGGATGTCTGCCACTGGATGCTATTTACCAGGTATCCTTTTGTGGCAGGAAAGAACCAGTGAGGTACCTATTGTGGATTAGGCTAAGTCGGGCACTAAGAGTTACAGAGTTTTTTGAGAAGTTGGAGAAAGATATCCGAATCAATTACTTGTTTACAAGGATTGTGAAACTTCTTGTTGTTGAACTATATTGCACACACGCTGCTGCCTGCATCTTTTACTATCTTGCCACCACCATGCCTGCCTCCCAGGAAGGTTATACGTGGATAGGAAGCCTAAAGATGGGTGACTATAGTTATTCTCATTTCAGAGATATTGATCTTTGGAAGCGCTATTTTACATCACTATATTTTGCCATTGTTACAATGGCAACTGTTGGTTATGGAGACATACATGCAGTCAATGTCAGGGAAATGCTATTTGTCATGGCTTATGTTTCCTTTGACATGATTCTTGGCGCTTATCTGCTTGGTAACATGACAGCATTGATCGTCAAAGGATCAAAGACAGAAAAGTTTAGGGATAGAATGGCAGAACTTATTAGCTACATGAACAGAAACAAACTTGGGAGGCAGATAAGTAATGAAATCAAACACCATATGCGATCGCAGTACGAGACCAGCTACACAGAAGCTGCTTTACTTCAGGATATTCCAGTGTCTATTCGTGCTAAGATCTCACAAAAGTTATATGGGCCCTACATTAGCAAGGTTTCTCTTTTCAAGGGATGCTCCCCGGGATTCCTTAAGCAGATTGCAACCAGAGTCCACGAGGAAATTTTCCTCCCAGGAGAAGTGATACTTGAAGAGGGAAATATGGTGGATCAACTTTATATTGTCTGTAATGGTAAACTGAAGGGAGTAGGAAGCAACGAAGACGAAACTGAAGGACCTCTGATTCATCTACAAACTAATGACTCATTTGGTGAAATTCCTCTTTTATGTAACACTCCTCAGGCTTATACAGTTCAAGTTGTTGAACTATGCAGGCTCGTGCGACTTGATAAACAATCTTTCATAAACATTCTTGAGATATACTTTTCTGATGGGCGGATCATATTAAACAACCTTCTTGAGGGAAAAGGATCAAATCTTCGAAACAAGATATTGGAATCTGATATCACACTTTATATTGGAAAGCGTGAGGCAGAGGTGGCTATGAGGGTAAATTGTGCTGCTTATAATGGAGATTTGTACCAACTAAGGCGTTTGATTGAGGCAAGAGCAGATCCTAATAAGACAGACTATAATGGAAGATCGCCTTTGCATTTTGCGGCATCCAAGGGATATGAAGATATTACTGATTACCTTATTGAACTGAGAGTGAACATCCATCTTTCAGATAATTTTGGAAACACTCCCTTGCTTGAAGCCATAAAGAATGGGCATGATGGAGTCACTTCTTTACTAGTTAAATCAGGGGCATTATTGACAGTGGAAGACGCTGGTAACTGTCTCTGCATGACTGTTGTAAGGAGGGATTTAAATTTTTTGAAAAGGCTTTTGGCCAATGGCATTAATCCAAATGCCAAAAATTATGATTCACGAACACCACTTCATCTTGCTGCCTCAGAAGGGTTATATTCAATGACAAATTTACTGTTGGAAGCAGGGGCAAGTGTTCTCGCAAAGGATAGATGGGGAAATACTCCACTTGATGAGGCTCGCATTGGTGGAAATAAAAATTTAATCAAGCTTCTGGAAGAAGCGATGTCTGCTCAGTTGTCTGAATTCTCTTCTTGCTCTCAAGAAATTCGAGCTGATAAAATGCGACAAAGGAAGTGCACTGTGTTCCCCTTCCACCCTTGGGATTCCAAAGAGGAGAGAAAGCAGGGAGTTGTATTATGGATTCCGAAGACCATTGAAGAGCTCATCGAGACAGCCATGGATCAATTAAAATGTTCTAGTGGCTCCTGCATCTTATCTGAAAATGGAGCTAAAATTATTGACATTGACATGGTTAGTGATGAAGAGAAGCTATTTTTGGTTGCTGAGACAATATAG 2253 41.5 MVWTHFILIWAVYSSFFTPMEFGFFRGLPENLFLLDIAGQLAFLVDMVVRFFVAFRDTQSYTTVDSHKRIALRYLKSRFVVDFLGCLPLDAIYQVSFCGRKEPVRYLLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLVVELYCTHAAACIFYYLATTMPASQEGYTWIGSLKMGDYSYSHFRDIDLWKRYFTSLYFAIVTMATVGYGDIHAVNVREMLFVMAYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMAELISYMNRNKLGRQISNEIKHHMRSQYETSYTEAALLQDIPVSIRAKISQKLYGPYISKVSLFKGCSPGFLKQIATRVHEEIFLPGEVILEEGNMVDQLYIVCNGKLKGVGSNEDETEGPLIHLQTNDSFGEIPLLCNTPQAYTVQVVELCRLVRLDKQSFINILEIYFSDGRIILNNLLEGKGSNLRNKILESDITLYIGKREAEVAMRVNCAAYNGDLYQLRRLIEARADPNKTDYNGRSPLHFAASKGYEDITDYLIELRVNIHLSDNFGNTPLLEAIKNGHDGVTSLLVKSGALLTVEDAGNCLCMTVVRRDLNFLKRLLANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNTPLDEARIGGNKNLIKLLEEAMSAQLSEFSSCSQEIRADKMRQRKCTVFPFHPWDSKEERKQGVVLWIPKTIEELIETAMDQLKCSSGSCILSENGAKIIDIDMVSDEEKLFLVAETI* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1553718 1569449 + Vvi17g169 Vvi17g169 778866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g169 750 Pfam Ion transport protein 2 248 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi17g169 750 ProSiteProfiles Ankyrin repeat region circular profile. 533 564 - -
Vvi17g169 750 PRINTS EAG/ELK/ERG potassium channel family signature 36 46 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi17g169 750 PRINTS EAG/ELK/ERG potassium channel family signature 147 157 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi17g169 750 PRINTS EAG/ELK/ERG potassium channel family signature 195 212 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi17g169 750 PRINTS EAG/ELK/ERG potassium channel family signature 239 248 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi17g169 750 SUPERFAMILY Ankyrin repeat 457 652 IPR036770 -
Vvi17g169 750 Gene3D - 556 675 IPR036770 -
Vvi17g169 750 SMART cnmp_10 323 441 IPR000595 -
Vvi17g169 750 ProSiteProfiles Ankyrin repeat region circular profile. 597 629 - -
Vvi17g169 750 Pfam Cyclic nucleotide-binding domain 344 427 IPR000595 -
Vvi17g169 750 SUPERFAMILY Voltage-gated potassium channels 2 248 - -
Vvi17g169 750 PANTHER POTASSIUM CHANNEL SKOR-LIKE 2 749 - -
Vvi17g169 750 ProSiteProfiles cAMP/cGMP binding motif profile. 323 426 IPR000595 -
Vvi17g169 750 Gene3D - 2 249 - -
Vvi17g169 750 ProSiteProfiles Ankyrin repeat profile. 533 565 IPR002110 GO:0005515
Vvi17g169 750 PANTHER POTASSIUM CHANNEL AKT1 2 749 IPR045319 GO:0005249|GO:0006813
Vvi17g169 750 SMART ANK_2a 467 496 IPR002110 GO:0005515
Vvi17g169 750 SMART ANK_2a 533 562 IPR002110 GO:0005515
Vvi17g169 750 SMART ANK_2a 564 593 IPR002110 GO:0005515
Vvi17g169 750 SMART ANK_2a 500 529 IPR002110 GO:0005515
Vvi17g169 750 SMART ANK_2a 630 660 IPR002110 GO:0005515
Vvi17g169 750 SMART ANK_2a 597 626 IPR002110 GO:0005515
Vvi17g169 750 Gene3D - 468 555 IPR036770 -
Vvi17g169 750 Gene3D Jelly Rolls 317 455 IPR014710 -
Vvi17g169 750 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Vvi17g169 750 ProSiteProfiles KHA domain profile. 677 750 IPR021789 -
Vvi17g169 750 CDD CAP_ED 323 437 IPR000595 -
Vvi17g169 750 Gene3D Helix hairpin bin 250 312 - -
Vvi17g169 750 ProSiteProfiles Ankyrin repeat region circular profile. 500 532 - -
Vvi17g169 750 Pfam KHA, dimerisation domain of potassium ion channel 676 745 IPR021789 -
Vvi17g169 750 SUPERFAMILY cAMP-binding domain-like 251 440 IPR018490 -
Vvi17g169 750 Pfam Ankyrin repeats (3 copies) 475 563 IPR002110 GO:0005515
Vvi17g169 750 ProSiteProfiles Ankyrin repeat profile. 500 532 IPR002110 GO:0005515
Vvi17g169 750 PRINTS Ankyrin repeat signature 501 516 IPR002110 GO:0005515
Vvi17g169 750 PRINTS Ankyrin repeat signature 613 627 IPR002110 GO:0005515
Vvi17g169 750 Pfam Ankyrin repeats (many copies) 584 638 IPR002110 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g169 K21867 - vvi:100255971 1488.78