Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g17 ATGTCCGCTATGGTTTCAGCTCTCACTCAAGTCATTGGAAACACTGACAAAAACCCACTTCATGATCTTGGAAACCCATCACCAATCTCCCACCACTCCGCCACAACCCCACATGATCAACCTTCTCAGCTTCTTCAAGATCAAGGGAACCAGCTGAGGAGAAGACACTATAGGGGAGTAAGGCAAAGACCTTGGGGGAAGTGGGCAGCTGAGATACGTGATCCAAATAAGGCAGCTCGAGTATGGCTGGGCACTTTCGACACTGCTGAGGATGCTGCACTTGCCTATGATGAAGCTGCTCTTAGGTTCAAAGGAAACAAAGCCAAGCTTAACTTCCCTGAAAGAGTTCAAGGCCGAAGCGAATTAGGTTACCTCACAAATCCTCCTTCCAGGTGGAGGTGGTGA 405 49.14 MSAMVSALTQVIGNTDKNPLHDLGNPSPISHHSATTPHDQPSQLLQDQGNQLRRRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDEAALRFKGNKAKLNFPERVQGRSELGYLTNPPSRWRW* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 108832 110748 - Vvi17g17 Vvi17g17 778714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g17 134 MobiDBLite consensus disorder prediction 14 51 - -
Vvi17g17 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 31 117 - -
Vvi17g17 134 MobiDBLite consensus disorder prediction 28 50 - -
Vvi17g17 134 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vvi17g17 134 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Vvi17g17 134 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PANTHER DNA-BINDING DOMAIN 31 117 IPR044808 GO:0003700|GO:0009873
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g17 - - - vvi:100245655 252.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1088 Vvi17g17 ECH
Vvi1g1351 Vvi17g17 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g17 . . . . . . . . . . Cma10g00010 . Car10g00007 . Sed14g0033 . . Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01787 Cam06g1985 Cec06g2035 Cco06g2043 Clacu06g1942 Cmu06g1882 Cre06g2693 . . Cone13ag0267 Cone19ag0251 . . . . . . . . . . . . . Cmo10g00008 . . . . . . . . . . . . . . . . . . . . . Lsi06g01687 Csa01g00006 . Cme02g02116
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14177 PF00847 AP2 3.50E-16 CL0081 Vvi TF