Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g170 ATGATAGCATCAAAGCCTAGATATCATCACCGCTCATCTCTTGTAAAGCAAGTACTAGCTGCAATGGTCCAGAACTGCCCATTGGATGCCTCACCCAACAAGAGTTGCAACCAGCCATGGACAACTGACTCTGTTTCCGAGGTACTCCGATCCATACCCAGACTCTTCTTCCAGTCACCCCGATCCATTGGCCGCCAAAAAGGCTTCCGCCATCGCTCACCTCTCAAGCAAAGAAACCTTTATCAAGAACCCAATAAATTTCACAGATATAGGGACCCCCACAAGGTGAAATTAGGAGTGGAGAAGGCAATGGAGTTCTACAGTTGGGTCGAGACCCAGTTCGGGTTTTCCCACAATGAGATGACATGTAGAGAGATGGGTTGTGTTTTGGCTAGAGGGAATAGATTGAAGGTGCTTTGGGAGTTTCTCCATGAAATGGCAAGAAAAGGGGGAAATGGGGTTGTGACTACTGCAACCATTACCTGTTTGATGAAAGTTCTGGGAGAAGAGGGGCTGGCTAATCAGGCATTGGCTGCATTCTATAGGATGAAACAGTTCCACTGTAAACCGGATGTCTATGCATATAATACGATTATTTATGCGCTTTGTAGAGTTGGAAACTTTAGGAAGGCAAGGTTTTTGTTAGAGCAAATGGAGCTACCGGGCTTTAGATGCCCGCCCGATTCGTTCACCTACACTATCTTGATTGGTTCTTATTGTAAGTATAGTCTGCAAACTGGGTGCAGGAAGGCAGTTAGGAGGAGGTTGTGGGAGGCAAATCATTTATTTCGTATTATGCTGTACTATAGTGCAGTTAACGAGATTGATAAAGCTGTTGATATGTTGTGCAAGATGAAAGAGATGAATCATGGGATACCCACTACAAGCTCTTATACTCCAATTATCCATGCTCTTTGTGAAACAGGAAGGATACTAGAGGCCAGGGATTTTCTTATTGAGTTGGTTGATGGGGGCTCAGTTCCCAGGGAGTACACTTATAAAGTAGTTTGTGATTCTCTGAGATCAGCAGGAGAGGCTAACATGCTAGGCGATGAGTTGCGTGGAAGAATTGAAAATGGCATAGAGAATAGATACAAGCAAGTAATGAAGGTGAAACTAATTATGACACACAGAATTTCCTTATAG 1146 43.98 MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQPWTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHRYRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPDSFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLYYSAVNEIDKAVDMLCKMKEMNHGIPTTSSYTPIIHALCETGRILEARDFLIELVDGGSVPREYTYKVVCDSLRSAGEANMLGDELRGRIENGIENRYKQVMKVKLIMTHRISL* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1571625 1575393 - Vvi17g170 Vvi17g170 778867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g170 381 TIGRFAM PPR: pentatricopeptide repeat domain 297 328 IPR002885 -
Vvi17g170 381 TIGRFAM PPR: pentatricopeptide repeat domain 193 219 IPR002885 -
Vvi17g170 381 TIGRFAM PPR: pentatricopeptide repeat domain 159 192 IPR002885 -
Vvi17g170 381 Pfam PPR repeat family 190 241 IPR002885 -
Vvi17g170 381 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 268 378 - -
Vvi17g170 381 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 38 267 - -
Vvi17g170 381 Gene3D Tetratricopeptide repeat domain 188 253 IPR011990 GO:0005515
Vvi17g170 381 Gene3D Tetratricopeptide repeat domain 97 185 IPR011990 GO:0005515
Vvi17g170 381 Gene3D Tetratricopeptide repeat domain 259 381 IPR011990 GO:0005515
Vvi17g170 381 Pfam PPR repeat 161 187 IPR002885 -
Vvi17g170 381 Pfam PPR repeat 297 325 IPR002885 -
Vvi17g170 381 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vvi17g170 381 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi17g170 381 PANTHER BNAANNG11840D PROTEIN 268 378 - -
Vvi17g170 381 PANTHER BNAANNG11840D PROTEIN 38 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g170 - - - vvi:100261059 625.165
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .