Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g172 ATGCCCATGGGAAGCTTGTCTGCACTACTCCATGGAAACAAAGGAGCAGGTAGGACTCCATTGAATTGGGAAATCAGATCAGGGATTGCTCTTGGAGCTGCTCGTGGTATTGAATACCTACACTCTCAAGGTCCTAGTGTCTCTCATGGAAACATTAAATCATCAAATATCCTCCTCACCAAGTCTTATGATGCCCGGGTCTCTGATTTTGGCCTGGCTCATCTTGTTGGGCCCTCCTCCACACCTAACAGGGTTGCTGGCTACCGTGCCCCAGAGGTCACCGACCCTCGCAAGGAAGGGGTTGACCTCCCAAGATGGGTGCAGTCCATAGTCCGTGAGGAGTGGACTTCAGAGGTCTTTGATCTCGAGCTCCTCAGGTACCAGAATGTTGAGGAGGAGATGGTTCAGCTCTTACAACTTGCCATAGACTGCACTGCTCAGTACCCTGACAAGCGCCCGCCAATATCTGAAGTAACAAAGCGGATTGAGGAGCTTTGTCGCTCTAGTCTGCGAGAATATCAAGACCCACAACCCGACCCAGTCAATGATGTGGATGATTTGTCTTCTCGGTGA 573 50.79 MPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQLAIDCTAQYPDKRPPISEVTKRIEELCRSSLREYQDPQPDPVNDVDDLSSR* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1630708 1633977 - Vvi17g172 Vvi17g172 778869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g172 190 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Vvi17g172 190 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g172 190 SUPERFAMILY Protein kinase-like (PK-like) 1 162 IPR011009 -
Vvi17g172 190 Gene3D Transferase(Phosphotransferase) domain 1 99 184 - -
Vvi17g172 190 Pfam Protein kinase domain 25 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g172 190 PANTHER OS05G0588300 PROTEIN 1 98 - -
Vvi17g172 190 PANTHER OS05G0588300 PROTEIN 99 190 - -
Vvi17g172 190 MobiDBLite consensus disorder prediction 169 190 - -
Vvi17g172 190 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 99 190 - -
Vvi17g172 190 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g743 Vvi17g172 ECH
Vvi1g482 Vvi17g172 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76302 PF00069 Pkinase 1.20E-13 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g172 - - vvi:100243943 358.221