Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g173 ATGCTAGCATTTCTACCCATTTCTAAGTCTCCGTTAATTTCAAATTCTGCGCTTCCCTTCAATACATTCCGCTTGAGACCTCCCAAATGGCGTCGCTGGGGTGTAATTAGAGCTGCTCGATCTGATTACTATTCCACCCTGAATGTCAGCAGGAACTCGACTTTGAAGGAGATTAAGAGCTCTTACAGGAAACTTGCTCGTAAGTACCATCCAGATTTGAACAAGAGCCCTGGAGCTGAGGAAAAGTTTAAAGAGATAAGTGCTGCATATGAGGTCCTATCTGATGATGAAAAAAGGTCTTTATATGATCGCTTTGGTGAGGCAGGTTTAGAGGGAGAATATGATAGGTCAAATGGTGGTTCAAAGGGGGTGGACCCTTTTGATTTCTTTGATGCATTTTTTGATGAGTCAAATGGGCCTTTTGGAAGATGGGGTGAACCAGGAGGCATGAACTTCAATTCGAGAAGCAAGGGCAACCAGGGGCTTGATGTTCGGTATGACCTATTTTTGAGCTTTGAAGAATCAATTTTCGGTAAACAGGAGGAGATTGAAGTTTCCTGTTTTGAGGTATGCGACAATTGTGGTGGAACAGGTGCCAAATCTAGCAGTTGCATAAAAACATGTACCAACTGTGGAGGTAAAGGAGGGGTGATGAAGACTCAGAAGACGCCATTTGGAATAATGTCTCAGGTATCTACTTGCTCAAAATGTGGTGGAGATGGTAAAATAATCACAAGTCACTGCCAAAGTTGTGGTGGCCATGGTAAAGTACAGTCAAAGCAAAGTATTGAAGTGATCATCCCACCTGGTGTTAGTGATGGAGCCACAATGCAAGTTCGAGGAAAGGGAAACTTTGATAAGAAAAGGGGCATGGCCGGTGATCTATATTTAGTACTCCATGTAAATGAAAAACATGGAATTTGGAGGGATGGTCTCAATCTTTACTCAAAGGTTAATGTTGATTATACTGAGGCAATATTAGGGACTGTTAAAAAGGTGGAAACCGTGGAGGGTTTGAGAGATCTTCAAATTCCTTCTGGAACTCAGCCTGGAGATTCAGTAAAATTGTCATACATGGGGGTCCCGGACATCAATAGGCCCTCCAGACGAGGTGACCATAACTTTGTTGTGAATGTTCTGATCCCAAAAGATATCAGTGACACAGAACGCATACTTGTTGAGAAGTTGGCTTCAATGAGGACAACCTGCAATGACCAGCCAGTTTCTTCCGAGGGTCCAGCTAAGGACCAAAAACATCATGCTTCACCTAAAAGGAGTGAACATGCTCCATCTATGTGGAAATCAATCAAGAACTTCTTGTGGAGGAACCCGTCCAGAACAAGTTTTGCTTCAGTTAGTGTGGATACTTCAACATTATTGCAGAGATGTAGCAGGCCAGATTCCTCACTCATGATCTCTTTATTGACGGTTTTCATCATAACATGTATATTTACCCTGATGGGTAAGAGTAATACTGCAAATTATTGCCTGAAAAGAGAAAAGGAAAGAGACTATTCTCCTCGCTTAATCCTCATCCTTCAGTTTCTGAACCCGTCGGTCGAGCTCGTCGATTCGGTCCACGAGCTTGGTGACAGAATAAAGCAACCAGTAGAAGAGCAAAGCAGCGGCAATCAAGGTGGCGTTGCGCTGGCTCTTCATCATGGATTTCTGGTGGCGGAGGTGGTCGGAAGGAGAGCAGTGGTGGGAAGAGCAAGTGGGTCGAGTCTCGTACTTCCAGTAGATAAATACCTTTCAAATATACAACATTAA 1770 43.45 MLAFLPISKSPLISNSALPFNTFRLRPPKWRRWGVIRAARSDYYSTLNVSRNSTLKEIKSSYRKLARKYHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEYDRSNGGSKGVDPFDFFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEESIFGKQEEIEVSCFEVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTCSKCGGDGKIITSHCQSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGDLYLVLHVNEKHGIWRDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSVKLSYMGVPDINRPSRRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSEGPAKDQKHHASPKRSEHAPSMWKSIKNFLWRNPSRTSFASVSVDTSTLLQRCSRPDSSLMISLLTVFIITCIFTLMGKSNTANYCLKREKERDYSPRLILILQFLNPSVELVDSVHELGDRIKQPVEEQSSGNQGGVALALHHGFLVAEVVGRRAVVGRASGSSLVLPVDKYLSNIQH* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1642886 1656845 - Vvi17g173 Vvi17g173 778870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g173 589 ProSiteProfiles dnaJ domain profile. 42 106 IPR001623 -
Vvi17g173 589 SUPERFAMILY Chaperone J-domain 38 147 IPR036869 -
Vvi17g173 589 Gene3D - 161 297 - -
Vvi17g173 589 PANTHER EXPRESSED PROTEIN 48 406 - -
Vvi17g173 589 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 406 - -
Vvi17g173 589 Pfam DnaJ central domain 191 255 IPR001305 GO:0031072|GO:0051082
Vvi17g173 589 MobiDBLite consensus disorder prediction 403 430 - -
Vvi17g173 589 PRINTS DnaJ domain signature 44 62 IPR001623 -
Vvi17g173 589 PRINTS DnaJ domain signature 62 77 IPR001623 -
Vvi17g173 589 PRINTS DnaJ domain signature 78 98 IPR001623 -
Vvi17g173 589 PRINTS DnaJ domain signature 98 117 IPR001623 -
Vvi17g173 589 CDD DnaJ 42 95 IPR001623 -
Vvi17g173 589 SMART dnaj_3 41 98 IPR001623 -
Vvi17g173 589 Gene3D - 308 399 - -
Vvi17g173 589 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 178 258 IPR036410 -
Vvi17g173 589 Pfam DnaJ domain 42 103 IPR001623 -
Vvi17g173 589 MobiDBLite consensus disorder prediction 412 430 - -
Vvi17g173 589 Pfam DnaJ C terminal domain 164 382 IPR002939 -
Vvi17g173 589 SUPERFAMILY HSP40/DnaJ peptide-binding domain 309 390 IPR008971 GO:0006457|GO:0051082
Vvi17g173 589 CDD DnaJ_C 163 385 - -
Vvi17g173 589 CDD DnaJ_zf 191 255 IPR001305 GO:0031072|GO:0051082
Vvi17g173 589 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Vvi17g173 589 ProSiteProfiles Zinc finger CR-type profile. 178 260 IPR001305 GO:0031072|GO:0051082
Vvi17g173 589 Hamap Chaperone protein DnaJ [dnaJ]. 39 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi17g173 589 Gene3D DnaJ domain 38 143 IPR036869 -
Vvi17g173 589 TIGRFAM DnaJ_bact: chaperone protein DnaJ 42 398 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vvi17g173 589 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 301 IPR008971 GO:0006457|GO:0051082
Vvi17g173 589 Gene3D - 191 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g173 K03686 dnaJ; molecular chaperone DnaJ - vvi:100249102 1028.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g173 . . Bda06g00866 . . . . Bma12g01283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01585 . . Blo15g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007152 1 1 1 1 0 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 2 1 1 1 3 1 0 1 0 1 37