Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g175 ATGGTTTCTATTGTTTCCCGGACTGGAAGGCAGTTCCAGCGTTACAATCAAGGTTGCCGCCAAGTCGTAGGATGCATTCCATACAGATACAAAACAGACAAAGAATCAGATGGAGCCCCCATTGAAGAATTAGAAGTCCTTGTGGTCAGTTCACAAAAGGGCAAAGGGATGCTATTCCCAAAGGGAGGTTGGGAAATTGATGAATCAATAGAAGAGGCTGCAACAAGAGAGACCCTAGAAGAAGCCGGTGTGCTTGGAAATGTGGGGTGTAAATTGGGAAAATGGAGCTTCAAGAGCAAGAGCCGGGGCACATTTGATGAAGGATACATGTTTCCTTTGCTTGTGAAGGAGCAACTAGACTTCTGGCCTGAGAAAAATGTTAGGCAAAGAAGATGGATGGCTGCATCAGAAGCCAGAGAAGTGTGCCAGCATTGGTGGATGAAGGAAGCCCTGGATATACTAATTCAGAGACTCATGAATGGTCAAGAAAAGGGGGTTGAAGATGAAACTCCAAGCCCATAG 522 45.79 MVSIVSRTGRQFQRYNQGCRQVVGCIPYRYKTDKESDGAPIEELEVLVVSSQKGKGMLFPKGGWEIDESIEEAATRETLEEAGVLGNVGCKLGKWSFKSKSRGTFDEGYMFPLLVKEQLDFWPEKNVRQRRWMAASEAREVCQHWWMKEALDILIQRLMNGQEKGVEDETPSP* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1666196 1668095 - Vvi17g175 Vvi17g175 778872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g175 173 CDD Nudix_Hydrolase_9 21 148 - -
Vvi17g175 173 SUPERFAMILY Nudix 9 157 IPR015797 -
Vvi17g175 173 ProSitePatterns Nudix box signature. 62 83 IPR020084 GO:0016787
Vvi17g175 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 157 - -
Vvi17g175 173 ProSiteProfiles Nudix hydrolase domain profile. 18 155 IPR000086 -
Vvi17g175 173 Pfam NUDIX domain 45 142 IPR000086 -
Vvi17g175 173 PANTHER NUDIX HYDROLASE 17, MITOCHONDRIAL 1 166 - -
Vvi17g175 173 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g175 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - vvi:100242429 355.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g695 Vvi17g175 ECH
Vvi1g490 Vvi17g175 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g175 . . . Bda15g00560 Bpe12g00647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00124 Blo15g00019 . . Bpe07g01087 . . Bma08g00106 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001639 0 2 2 2 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 3 69