Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g177 ATGGCAGTCAAAATACACCATTTGCTTTTCTCTGTGGAAGGTGAAGGGTGCACAAGCCTTGACCAGTCTTTTTCTGAATATCTTTCCAGAAGAGATTGGGGGATTCTGCCCTTGGAACCCTTCCACTACCAGAAAGGGGCCCGAGCCATGGCTTTGCGTTTGATCCTCCTCCTGCAACTTGCAGTACTGGTATGGGAGTTAGAAGTTGCCGCTGAACTAGCTCTGCCGGGCTGTGCCAGCCACTGCGGCAATATCAGCATCCCATATCCATTTGGGACTACCCCAGAATGCTACCTAAACCAAGATTTCTTCATCAATTGCAACTCCACCCATCAAGCTTTTCTGACGGACAGTAACATAGATGTTCTATCGATTTCGGTTTCGGGTCAATTGCGAGTTCTTTCGTATGTGGCTCGAGACTGTTACAACAAATCCGGGCAAAGAGTCGCCAACAACGATCCATGGATGACACTGGCGAAGTTCCCCATCTCCCATACTCGGAACAAGTTCATGACAGTGGGCTGCGACACCTACGCTTTCATTAAAGGCTCAAGTGGGAAAAAATACAAGACTGGCTGCTTATCACTGTGTGAGAGCAAAGATAGTGTTATCAACGGGTCTTGCTCGGGGATCGGCTGTTGCCAGACCACAATCCCTGTAAATGTAACGAGCATTGATATCAGTGTGGACAGCTACGACAGCTACACAGGTGTGTGGGAATTTAATCCATGCGGCTTCGCTTTTGTGGCTGAAGATGGCTATTTCAACTTCTCTTCCGCAGACCTCCTTGATTTACAGAACAAAACCAAGGTTCCTACAGTGCTTGATTGGACAATAGGAGATGAGAAATGCGACCAAGCAAAGGAGAATGGAACAAGTTACGCCTGCAAGGACAATAGCTACTGTTATGATCCAGACAATGGTCCTGGGTATAGGTGCAATTGCTCAGAGGGATATGAAGGAAACCCCTATCTCTTAAATGGTTGCAAGGATATCGATGAGTGTGAGGTTGATAACCCCTGCAATGTAACACATACATGCCGGAATTTACCAGGGAGTTTTAGTTGTTTTTGCCCGGCTGGGTACGAAGGTGATGGATTTAAAATTGGCACAGGCTGCAGTCCCATGCCTAGCTCAGAGTCGAAGTTTCCTTTGGTTAATGTTGCCTTAGGTATCAGCATAAGTCTTTTAGTTTTACTTTTGGTGAGTTCTTGGTTGTATTGGGGATTTAGGAAACGAAAGCTTATCAAATTGAAAGAGAAATTCTTTGAGCAAAATGGTGGTATCATGCTGCAACAACTACTCTCTAAGCACGAAGGATTTGCTGAAGCAACTAAAATATTTACTACAGAAGACCTCAAGAAAGCAACAAACAACTATGATGAAAGAAGACTATTAGGATACGATCGCTTGTTTGAAATTCTTGATGATAGAGTTTTGAATGAGGGAAACACTAAGCATTTGAAGGAAGTTGCTATCTTAGCAAAGAGGTGTTTGATGGTAAAAGGAGAGGAAAGGCCTACTATGAAGGAAGTTGCGATGGAACTAGAGGGATTAAGAATATTAGAAACACATCCTTGGGTGAACAATAATTCAAATCCAGAAGAAACTGAATACTTGATTGGTCAATCACAAGATGCTTATAAAGGTGATAACAGTAGCAACATAATAGGATATGATAGCATAAGAGATCAAGTCATGGTGGACTTTAATGGTGGGCGGTGA 1725 43.65 MAVKIHHLLFSVEGEGCTSLDQSFSEYLSRRDWGILPLEPFHYQKGARAMALRLILLLQLAVLVWELEVAAELALPGCASHCGNISIPYPFGTTPECYLNQDFFINCNSTHQAFLTDSNIDVLSISVSGQLRVLSYVARDCYNKSGQRVANNDPWMTLAKFPISHTRNKFMTVGCDTYAFIKGSSGKKYKTGCLSLCESKDSVINGSCSGIGCCQTTIPVNVTSIDISVDSYDSYTGVWEFNPCGFAFVAEDGYFNFSSADLLDLQNKTKVPTVLDWTIGDEKCDQAKENGTSYACKDNSYCYDPDNGPGYRCNCSEGYEGNPYLLNGCKDIDECEVDNPCNVTHTCRNLPGSFSCFCPAGYEGDGFKIGTGCSPMPSSESKFPLVNVALGISISLLVLLLVSSWLYWGFRKRKLIKLKEKFFEQNGGIMLQQLLSKHEGFAEATKIFTTEDLKKATNNYDERRLLGYDRLFEILDDRVLNEGNTKHLKEVAILAKRCLMVKGEERPTMKEVAMELEGLRILETHPWVNNNSNPEETEYLIGQSQDAYKGDNSSNIIGYDSIRDQVMVDFNGGR* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1702670 1706116 + Vvi17g177 Vvi17g177 778874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g177 574 Gene3D Transferase(Phosphotransferase) domain 1 427 537 - -
Vvi17g177 574 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 347 358 IPR000152 -
Vvi17g177 574 Gene3D Laminin 335 369 - -
Vvi17g177 574 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 468 544 IPR045274 GO:0007166
Vvi17g177 574 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 55 467 IPR045274 GO:0007166
Vvi17g177 574 Gene3D Laminin 282 334 - -
Vvi17g177 574 ProSitePatterns Calcium-binding EGF-like domain signature. 331 356 IPR018097 GO:0005509
Vvi17g177 574 CDD EGF_CA 331 365 - -
Vvi17g177 574 SUPERFAMILY EGF/Laminin 331 368 - -
Vvi17g177 574 SMART egf_5 283 330 IPR000742 -
Vvi17g177 574 SMART egf_5 334 374 IPR000742 -
Vvi17g177 574 ProSiteProfiles EGF-like domain profile. 331 368 IPR000742 -
Vvi17g177 574 Pfam Calcium-binding EGF domain 331 363 IPR001881 GO:0005509
Vvi17g177 574 Pfam Wall-associated kinase 206 316 IPR013695 GO:0004674|GO:0016021
Vvi17g177 574 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 468 544 - -
Vvi17g177 574 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 55 467 - -
Vvi17g177 574 Pfam Wall-associated receptor kinase galacturonan-binding 78 131 IPR025287 GO:0030247
Vvi17g177 574 SMART egfca_6 331 374 IPR001881 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g177 - - - vvi:100252663 836.639
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160