Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g18 ATGGGAAATTGCTGCTCCGACGACGGCGGCGGAAGGTCGGCGGTGGGCGGCACATCCGCTTCTCAACATGATCATAACGACGCCGTGGATTTATTCCTCAAGTCTCGCGGCTACCGCGGCCTTTTTGTTCAGATCGAGCTATCATTGTCTGCTTCAAACTTGCGTGATCGGGATGTGCTCTCCAAGAGTGACCCCATGGCAGTTGTCTATACAAAATCAAAAGATGGAGCTCTTGAAGAGCTGGGCCGTACTGAAGTGGTGTTGAATTCATTGAATCCCATGTGGTTCACGAAACTTATTATTAATTATCAGTTTGAAGTTGTGCAGACCTTGGTGTTTCGGGTGTATGATGTTGACACTCAGTTTCACAATGTAGATGTAAAGATGCTTAAGCTGGATGAGCAGCAGTTTCTTGGTGAGGCTACTTGTTCATTGTCTGAGATAGTTTCCAAGTCAAACAGGTCTTTGACCTTAGATCTTGTACATAGAGAAGAATCTATCAAATCAACCCGTTCACAAAACTTAGGAGAGCTTACTGTTCATGCTGAGGAATTGAGTAGTTCAAAGATCGCAATGGAGATAATATTCAGGTGTTCAGATTTGGAATATAAGGATCTCTTCTCAAGAAGTGACCCCTTTCTAGTAATATCAAAGATTGTCGAGGGTGGGATCTCTATCCCAATTTGCAAGACAGAAGTCATAAAGAATGATCTCAAACCAAAATGGAAATCAGTATTTCTGAACATTCAACAAGTTGGAAGCAAGGACAATCTGTTAACAATAGAGTGCTTTAACTTCAATAGCAATGGAAAACATGATTTAATTGGGAAAATTCAAAAATCGCTTGCAGACTTGGAAAAGCTCCATTCTAGTGGGCAGGGAGAGAATTTTTTTTTACCAACTGCTGTTGGAAACAATCACCACAACAAGGTGTTAAAGAGTCAGTTATTTGTGGAGTACTTTTCTGAGACTGTCGAACACACTTTTCTGGATTACTTGGCTGGTGGATGTGAACTGAACTTCATGGTGGCTATTGATTTCACAGCTTCAAATGGAAATCCTCGCCTCCCTGATTCCTTGCATTATATTGACCCCTCAGGCCGGCCAAATGCATATCAGAGAGCAATATTAGAGGTTGGAGAAGTGTTACAGTTTTATGATTCAGACAAGCGCTTTCCTGCCTGGGGTTTTGGAGCACGGCCAATTGATGGTCCTGTCTCTCATTGTTTCAATTTGAACGGAAGCAGTAATTACTGTGAGGTTGATGGAATTCAAGGAATTATGATGGCGTATACAAGTGCTCTCTTTAATGTTTCTCTTGCAGGGCCGACCCTTTTTGGACCTGTGATTAGCAGTGCTGCGCAGATTGCCAGCCAGTCACTTATAAATGGTCGACAAAAATACTATGTTTTGTTAATAATCACAGATGGAGTGATAACTGATCTCCAAGAAACCAAAGATGCCCTTGTGAAGGCATCTGACTTGCCATTGTCAATTTTTATTCTTGGAGTTGGAGGAGCTGACTTTAAGGAGATGGAGGTCTTAGATGCAGATAAAGGAGAGAGACTGGAAAGTTCAAATGGACGTGTTGCATCGCGCGATATAGTCCAGTTTGTTCCATTTCGTGATGTGCACAGTGGAGAGATCTCTGTCGTTCAAGCCCTTCTCGCAGAATTACCTACTCATTTTTTAACCTACATGCGAACAAGAAATATTCTTCCAAATTCCTGA 1731 42.17 MGNCCSDDGGGRSAVGGTSASQHDHNDAVDLFLKSRGYRGLFVQIELSLSASNLRDRDVLSKSDPMAVVYTKSKDGALEELGRTEVVLNSLNPMWFTKLIINYQFEVVQTLVFRVYDVDTQFHNVDVKMLKLDEQQFLGEATCSLSEIVSKSNRSLTLDLVHREESIKSTRSQNLGELTVHAEELSSSKIAMEIIFRCSDLEYKDLFSRSDPFLVISKIVEGGISIPICKTEVIKNDLKPKWKSVFLNIQQVGSKDNLLTIECFNFNSNGKHDLIGKIQKSLADLEKLHSSGQGENFFLPTAVGNNHHNKVLKSQLFVEYFSETVEHTFLDYLAGGCELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAILEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSNYCEVDGIQGIMMAYTSALFNVSLAGPTLFGPVISSAAQIASQSLINGRQKYYVLLIITDGVITDLQETKDALVKASDLPLSIFILGVGGADFKEMEVLDADKGERLESSNGRVASRDIVQFVPFRDVHSGEISVVQALLAELPTHFLTYMRTRNILPNS* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 116407 141670 - Vvi17g18 Vvi17g18 778715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g18 576 Gene3D C2 domain 194 319 IPR035892 -
Vvi17g18 576 CDD C2B_Copine 192 287 IPR037768 -
Vvi17g18 576 SUPERFAMILY vWA-like 337 521 IPR036465 -
Vvi17g18 576 SMART C2_3c 42 157 IPR000008 -
Vvi17g18 576 SMART C2_3c 195 294 IPR000008 -
Vvi17g18 576 PANTHER COPINE 1 575 IPR045052 GO:0005544
Vvi17g18 576 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g18 576 CDD C2A_Copine 44 164 - -
Vvi17g18 576 CDD vWA_copine_like 309 563 IPR010734 -
Vvi17g18 576 SMART VWA_4 338 535 IPR002035 -
Vvi17g18 576 Pfam C2 domain 195 290 IPR000008 -
Vvi17g18 576 Pfam C2 domain 49 157 IPR000008 -
Vvi17g18 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 49 163 IPR035892 -
Vvi17g18 576 ProSiteProfiles C2 domain profile. 174 298 IPR000008 -
Vvi17g18 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 195 288 IPR035892 -
Vvi17g18 576 ProSiteProfiles C2 domain profile. 25 158 IPR000008 -
Vvi17g18 576 Pfam Copine 359 574 IPR010734 -
Vvi17g18 576 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 575 - -
Vvi17g18 576 Gene3D C2 domain 41 193 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g18 - - - vvi:100250795 1139.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83