Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g180 ATGGCTTCTTCAGGTGCGGTGGGTTTTGTTGGGTTGGACGATTTGAGTTTGGAGTTGGCTGCTTCTCTCATTCGCGCCGGCTATGCTGTTAAAGCCTTTGAGATATTTGGCCCTCTAATGGATGGGTTTTTGAAGTTGGGGGGAGTTAGATGCACTACCCCTTTGGAGACAGGGAAAGATGTTTCAGCTTTGGTCGTATTGATATCGCACGCAGATCAAATAAATAACATATTTTTCAGTGATGAGGGTGCTTTAGGAGGGTTAGCCAAAAATGCAGTGATCATTGTCCGTTCAACCATATTACCAGCGAATATACAGAAGCTTGAGAAGCGTCTTACAGGCAACTTATTCCCTACTTTACACCCAAAAACCGCAGCTGCTCTGTCCATATCCTCCACGCCCCCCACTGGAATAATTTCACTTTTTTGCATGTTAATTTTTAGGCTTGAAACCACTTCAAAACAATACACAACCCACTTCCAAAAATCCAACTGGTCCCTGTTATCCTCGCAAAAAAGAAAAGTGTCATTTGCAAACAACAGATGGGAAACTGAAACCCTTTCTCCACGTCTCTCCATTACTTTGAAGCCCTTAATGAAACCTTTCTCCTCAGCTCTTGATATTAAGCTACTAAAAGCTTCCATTACTATAAAGATAATCCTGTGTATGGGCATTGCATCCCCTTTTGTTAGGCACTCTTTAATCAATTTCTTTTGCCTATCAATAAAAAAAAATGTATACGATGGTGAGGCGGCTTTTCTAGTTGATATATATGTCTCTAAGGGAATGTCAGATTCTTTGAATGGAAAAGTCATGATCACTTCCTCAGGAAGGTCAGACGCTATTGCAAGGGCACAGCCTATCCTCTCTGCAATGTGTGAAAAGCTTTACATTTTTGAGGGTGAAGTGGGTGCTGGAAGTAAAATTAAAATGGTTAATGGGCTGCTGGAGGGCATTCATCTTGTTGCTTCTGCAGAGGCCATTGCTCTTGGTGTGCAGGCTGGGATTCATCCATGGATTATCTATGATATCATTGCTAATGCGGCTGGAAATTCATGGGTTTTCAAGAATCATGTTCCCCAATTGTTAAGGGGTAATCTTACCAAACAACATTTCCTGAATACTGCTGTCCAAAATGTGGGGAGCATATTGGATATGGCTAAATCACTTCCATTTCCTCTTCCACTTTTGGCGGTTGCTCATCAACAACTTATTTCTGGTTCTTCATATGGTCATGGACATAATGATGCCACTTTGGTCAAGGTTTGGGAAAAAGTATTTGGAGTGAATCTCACTGCTGCAGCCAATGCAGAAATCTACAGCCCTCTGGAACTGGGAAGTCAAATTACAGCCAAACCAAAGACTGTGAAACGTGTTGGTTTCATTGGTCTCGGAGCAATGGGGTTTGGGATGGCAACAAGCCTTCTAAAATCAAACTTCTGTGTTCTTGGTTTTGATGTATATAAGCCAACACTATCTCGATTTGCCAATGCTGGTGGGTTAGTTGGGGAGTCTCCAGCAGAAGTATCCAAAGATGTAGATGTGCTTGTAATCATGGTCACAAATGAAGCTCAAGCTGAAAGTGTTCTATTTGGAGATCTTGGTGCAGTAAAAGTCCTTCCACCTGGGGCATCTATTATCCTTTCATCCACTGTTTCTCCGGGATTTGTGATCCAGCTTGAGCGCCGATTGAAAAATGAAAACAAGAATTTGAAATTGGTGGATGCTCCTGTTTCTGGTGGTGTCAAGAGGGCCTCCATGGGAACCCTTACGATAATTGCTTCAGGAACAGATGAAGCTCTTACATCTGCTGGTTCAGTTCTATCAGCACTAAGTGAGAAACTCTACATTATCAGGGGAGGTTGTGGGTCTGGAAGTGCTGTAAAGATGGTCAATCAACTGCTGGCGGGAGTGCATATAGCAGCATCAGCTGAGGCAATGGCAATTGGTGCTCGATTGGGTCTTAATACAAGAAAGTTGTTCGATTTCATCACAAATAGTGGGGGAACATCTTGGATGTTTGAGAATCGTACTCCTCACATGCTGAATAATGACTATACACCATGCTCTGCCCTGGATATCTTTGTGAAGGATTTGGGCATTGTTTCTCATGAGTGCTCATCCTATAAAGTTCCACTTCTTCTTTCTACTGTTGCACACCAACTTTTCCTGTCAGGTTCTGCTGCTGGTTGGGGTCGGTATGATGACGCTGCTGTGGTTAAGGTCTACGAAACTCTAACTGGTGTTAAAGTTGAAGGCAAGCTTCCTGTTGTTAAGAAAGAAGAAGTTCTCCATTCTCTTCCACCTGAATGGCCATCAGATCCCATTGATGACATACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGGAACGTCGAACCTCTTGTTGAACAATTCAGAAAAAGGCCCAAATGCTTCTTCATTTTGACTAATTCCCGGGCATTGACTCCAGAGAAGGCCACTGCATTGATTAAAGATATCTGCACAAACATACGTAATGCAGCGAACTCAGTGGGTAATATTGATTATACTGTTGTTCTAAGAGGAGATTCAACATTACGGGGTCATTTTCCAGAGGAAGCAAATGCAGCAGTTTCAGTGCTGGGTGAGATGGATGCATGGATCATATGTCCATTTTTCCTGCAAGGAGGCCGGTATACTATTGATGACATACACTATGTTGCAGATTCTGACCGTCTTGTTCCTGCAGGGGACACAGAGTTTGCTAAAGATGCTTCTTTTGGCTATAAATCTTCAAACCTCCGTGAGTGGGTAGAGGAGAAAACAATAGGTCGCATACCAGCCAGCAGTGTTACGTCTATTTCTATCCAACTTTTAAGGAAAGGTGGACCTGATGCTGTTTGCATGCATCTTTGTTCTTTGCAAAAGGGTTCAACATGTATAGTTAATGCAGCTAGTGAAAGAGACATGGCTGTATTTGCAGCTGGAATGATCCAGGCAGAAAGGAAGGGAAAGCATTTCTTATGCCGCACTGCTGCTAGTTTTGTTTCAGCTCGGATTGGCATTATCCCGAAAGCTCCAATTTTGCCAAAAGATCTAGGAATAAACAAAGAAAGGAACGGTGGACTCATAGTTGTGGGGTCATATGTTCCAAAAACAACAAAACAGGTTGAAGAGCTTAAATTACAATGCGGTCAGATCTTACGAAGCATTGAGATATCTGTTGATAAACTTGCCATGAAGTCATCAGAAGAGAGGGAGGAAGAAATCAGTCGAGCTGCAGAGATGGCAGATGTTTTCCTCAGGGCTTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGAAATTGTTAGGCGGATAACTACAAGACCTCGATATATCCTTGCAAAGGGTGGAATCACATCATCTGACCTTGCTACAAAAGCTCTAGAAGCAAGACGTGCTAAAGTAGTTGGGCAAGCCCTTGCTGGTGTTCCCTTGTGGCAGCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTCGTCCTTTTAGACTTTCATCAACAAAGGGGCTTCTTCTTGATGCAGAAAGGGGTGGATATGCTGTTGGAGCATTCAATGTTTATAATCTGGAAGGAGTTGAGGCAGTTGTTGCTGCTGCAGAGGAAGAACAAAGTCCTGCCATTTTACAGATCCATCCTAGTGCTTTAAAACAAGGAGGAATTCCCTTGGTCGCATGTTGTATTGCTGCTGCTGCACAAGCTAGTGTTCCCATTACTGTTCACTTTGATCATGGAAGTTCCAAGAGAGAGCTGGTGGATGTTCTTGAGTTGGGATTTGATTCAGTTATGGTAGATGGTTCTCATCTTCCCTTCAAGGACAATATCTCATACACAAAATACATATCACTCTTGGCGCACTCAAAAGATATGATGGTGGAAGCTGAATTAGGAAGATTATCAGGAACTGAAGATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCGGAAATGTCCATGGAAAATACCCTGCAACTGGCCCAAATCTCAGACTTGATTTACTTAAGGAACTGCACAATTTGTGCTCAAAGAAAGGAGTTCTTCTAGTTCTTCATGGAGCTTCTGGGTTGTCAGAGAAACTCATCAAGGAATGCATAGAACGAGGCGTGACAAAGTTCAATGTGAACACAGAGGTGCGAAAGGCTTACATGGAGTCACTGAGCAGCCCTGGGAAAGACTTAGTACATGTTATGTCAAATGCAAAGGAAGCCATGAAAGCTGTGGTTGCAGAGAAGATGCATCTGTTTGGTTCAGCTGGGAAAGCATGA 4530 42.76 MASSGAVGFVGLDDLSLELAASLIRAGYAVKAFEIFGPLMDGFLKLGGVRCTTPLETGKDVSALVVLISHADQINNIFFSDEGALGGLAKNAVIIVRSTILPANIQKLEKRLTGNLFPTLHPKTAAALSISSTPPTGIISLFCMLIFRLETTSKQYTTHFQKSNWSLLSSQKRKVSFANNRWETETLSPRLSITLKPLMKPFSSALDIKLLKASITIKIILCMGIASPFVRHSLINFFCLSIKKNVYDGEAAFLVDIYVSKGMSDSLNGKVMITSSGRSDAIARAQPILSAMCEKLYIFEGEVGAGSKIKMVNGLLEGIHLVASAEAIALGVQAGIHPWIIYDIIANAAGNSWVFKNHVPQLLRGNLTKQHFLNTAVQNVGSILDMAKSLPFPLPLLAVAHQQLISGSSYGHGHNDATLVKVWEKVFGVNLTAAANAEIYSPLELGSQITAKPKTVKRVGFIGLGAMGFGMATSLLKSNFCVLGFDVYKPTLSRFANAGGLVGESPAEVSKDVDVLVIMVTNEAQAESVLFGDLGAVKVLPPGASIILSSTVSPGFVIQLERRLKNENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEALTSAGSVLSALSEKLYIIRGGCGSGSAVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKLFDFITNSGGTSWMFENRTPHMLNNDYTPCSALDIFVKDLGIVSHECSSYKVPLLLSTVAHQLFLSGSAAGWGRYDDAAVVKVYETLTGVKVEGKLPVVKKEEVLHSLPPEWPSDPIDDIRTLDQSNLKTLIVLDDDPTGTQTVHDIEVLTEWNVEPLVEQFRKRPKCFFILTNSRALTPEKATALIKDICTNIRNAANSVGNIDYTVVLRGDSTLRGHFPEEANAAVSVLGEMDAWIICPFFLQGGRYTIDDIHYVADSDRLVPAGDTEFAKDASFGYKSSNLREWVEEKTIGRIPASSVTSISIQLLRKGGPDAVCMHLCSLQKGSTCIVNAASERDMAVFAAGMIQAERKGKHFLCRTAASFVSARIGIIPKAPILPKDLGINKERNGGLIVVGSYVPKTTKQVEELKLQCGQILRSIEISVDKLAMKSSEEREEEISRAAEMADVFLRASKDTLIMTSRELITGKSPSESLEINFKVSSALVEIVRRITTRPRYILAKGGITSSDLATKALEARRAKVVGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDSKALADVVKSWVRPFRLSSTKGLLLDAERGGYAVGAFNVYNLEGVEAVVAAAEEEQSPAILQIHPSALKQGGIPLVACCIAAAAQASVPITVHFDHGSSKRELVDVLELGFDSVMVDGSHLPFKDNISYTKYISLLAHSKDMMVEAELGRLSGTEDDLTVEDYEAKLTDVDQALEFIDETGIDALAVCIGNVHGKYPATGPNLRLDLLKELHNLCSKKGVLLVLHGASGLSEKLIKECIERGVTKFNVNTEVRKAYMESLSSPGKDLVHVMSNAKEAMKAVVAEKMHLFGSAGKA* 1510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1736379 1773393 + Vvi17g180 Vvi17g180 778877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g180 1509 Gene3D - 789 1028 IPR037051 -
Vvi17g180 1509 Pfam Nucleotide-binding C-terminal domain 1052 1218 IPR031475 -
Vvi17g180 1509 SUPERFAMILY YgbK-like 790 1222 - -
Vvi17g180 1509 Gene3D - 620 752 IPR013328 GO:0016491
Vvi17g180 1509 Gene3D - 3 128 - -
Vvi17g180 1509 Gene3D - 452 619 - -
Vvi17g180 1509 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 3 114 - -
Vvi17g180 1509 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 254 417 - -
Vvi17g180 1509 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 416 1434 - -
Vvi17g180 1509 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 623 750 IPR008927 -
Vvi17g180 1509 Pfam Sugar-binding N-terminal domain 790 1027 IPR010737 -
Vvi17g180 1509 PANTHER ALDOLASE-RELATED 416 1434 - -
Vvi17g180 1509 PANTHER ALDOLASE-RELATED 3 114 - -
Vvi17g180 1509 PANTHER ALDOLASE-RELATED 254 417 - -
Vvi17g180 1509 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 302 428 IPR008927 -
Vvi17g180 1509 Gene3D Aldolase class I 1225 1509 IPR013785 -
Vvi17g180 1509 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 457 615 IPR036291 -
Vvi17g180 1509 Gene3D - 1042 1224 IPR042213 -
Vvi17g180 1509 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 114 IPR036291 -
Vvi17g180 1509 SUPERFAMILY Aldolase 1233 1509 - -
Vvi17g180 1509 CDD TBP_aldolase_IIB 1234 1507 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vvi17g180 1509 Gene3D - 241 307 - -
Vvi17g180 1509 Pfam Fructose-bisphosphate aldolase class-II 1233 1508 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vvi17g180 1509 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 304 420 IPR029154 GO:0051287
Vvi17g180 1509 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 623 743 IPR029154 GO:0051287
Vvi17g180 1509 TIGRFAM cbbA: ketose-bisphosphate aldolase 1231 1509 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vvi17g180 1509 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 113 IPR006115 GO:0050661
Vvi17g180 1509 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 458 616 IPR006115 GO:0050661
Vvi17g180 1509 Gene3D - 308 426 IPR013328 GO:0016491
Vvi17g180 1509 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 461 474 IPR002204 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g180 - - - vvi:100262718 2414.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34