Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g183 ATGGCGATCGTGACGGGAGATAGGTACCTGGAATCGCTGGCGCTTCATGAGTTGGAGAGTCTTCTCGCCGGTGCCCCGGTTGATTATCTCCGGGCCTACATCTCCGACCTAGGCGACCACCGAGCGCTCGAGCAGCTTCGGCGGATTCTGCGCCTGCTGACCTCGCTGAAGGTCGTGTCAGTGCTTCCGCCGTCGGTGAGGGATCCGACGAGGCTGTCGTTGTTGCCGTTTGGGCGGTTGAGGGTTTTGGAGCTCCGCGGGTGCGATCTATCCACTTCTGCTGCTAGGGGGCTTCTTGAATTGAGGCACACGTTGGAGAAGATCATTTGCCATAATTCTACTGATGCTCTTCGGCATTTGTTTGCAAGTAGAATTGTGGCAATAAAGGACTCACCACAGTGGAAACGATTGTCATTTGTTTCATGTGCTTGTAATGGCTTGCTTCTCATGGATGAGTCTTTGCAACTTCTTCCTGCTGTTGAAACTCTTGATCTAAGCAGAAACAAGTTTTCAAAGGTTGATAATCTACGGAAGTGTACAAAATTGAAGCACCTGGATCTTGGGTTCAATCACCTGAGAACAATATCATCATTTAGTGAGGTCTCTTGTCATATTGTTAAACTTGTTATGAGGAACAATGCTCTAACTACGTTGCGTGGGATTGAGAATTTGAAGTCACTTGAAGACCTTGATCTTTCCTACAATGTTATTTCCAATTTTTCAGAGATTGAGATCCTTGCTGGCCTTCCATCTCTACGGCGCTTGTGGTTAGAAGGAAATCCAATATGTTGTGCCAGATGGTATCGAGCACAAGTATTCAGTTTTTTTGCTCATCCAGATAAAGTGAAATTAGATGAAATGGAAATCAGCACAAGAGAGTTTTGGAAGAGGCAAATTATTATTGCCAGTAGGCAGAAACGGCCTGCTAGCTTTGGATTCTATTATCCTGCGAGAGAGGATGCTGGAGAAGGGGGTATAAGCACAAAAAGGAAAAAGCTATCTCGACTTGCTTGTATTGAGACTGAGGGGAGCATGTATATATGCTCTGACCAAGATTCAGTGTCATGTGATAATGAGGTCAGAAGTAAAGAGGATAATGCCATTTCTGATGATGAAGCCGAAATAGTTGATTTGATGAAAAGAGTTGAGCTCATGAAGAAGGAGCGTTCCGTTCTTTGGTTGCGGGAGTTTAAGGAGTGGATGGATCTGGCTTCTGACAGTTTTGCAGAAGGCAATAAATATGGGTCTGTCTTGGATTCTGGTACAGAAAATTATATGAGAAAGAAGGCTGGTCAAAGGCATCTTGGTGAAAGCTCAAGATATGTCTCAGACTCTGTTCAAGCTTCAGGGGATGAAAGTGGCACGGACATATTGGAATCTAATAACTCCTTTGCAGATATCTCCATAGGTTTGGTTCCTCAATACGTTGATCGTAGTGGTGAATCAGGTTCTATGTTTGCATTGAGGGACACTGGTTCTCATTTGTCCTCTGATTGCCCTGGATCACCTCCGCATTATCAAGAGGACCTTCTGCATCGCCGCCACATCTTAGTTGAAGATATTTTGCAGCTATCTGCTGAATCCTATTCAGTGGCATCATCTGATAGCAATACAAGTGACAGCAATGATCTCTGTGAAGTTGAATCATCCGTATCTGAAGTTGAGCAATCAGTAAATGAAGAAATTTCCAATAGGAAAAATGGGAGATATTTATTAGATTCACATGCTGGACAAGCCTCTGCCACTCTGAAACTTTTAAAACCGGAGCAATCTCTGCAATTGTGCAGTAATGATTTTTGTGCTGGTGCTCATGATGGTGAAATTGCTAGTCTTTCAAACGAAGAAGCTGATTGGTTGGACAAGAAAAAGTGCAAAAGGAAGCCAAGAAAAATTGTTTCAGTATCACAGAATAATATGGTTGGGAGGGCAGAAGACTCACAAACATTAGTTGGCAATCCAGATTTTTGTGGAGGTGATATGGAAGATGAACAAGGAGAACAGATTTTTGGTTGGAATTTTTGGGACGGATTTGTTGATGGGGAACAGACTTGGCCAACTACTGGGGCTGATGATTTCATTAAGAACTATTTCAATTTAAACATTGCGGATTCAAGTGTTAATGAAACTTGTAAGCAGTATATGCGGTCTAGTTGTTTTCTTGAGCTGGAATCCAGGTACACAGAAAGAGAAGTGGCTATACTACTGAGCAGTGAACACAAGTTGTATGTACTACTCGTTGATGTCACGTTTGATGGGTCAGGAACCATCTTAAAACTTTTGGGTTGCCACAGGCTTGAAGATGTTAGAGAGGTTTTGGTTGGTGTAGGACTTCAGGTTGTGAGGGTGTATATTGAGAGGGATGCAGCATATATGTTTCTAACAAGGAGTATGGAGAAATCAAGGCAATTACTGTGTACCTTGCAAGTTGTTGATTCAAATGAAACATGCAGCAAATGTTCTTTGAGGAGTTTGGAGCAGGTTCAGGTGGAATTGTTTGAGAAACATATATGTGGAGGTTCAAAAATAAGCATATTCCAATATTCTTTGGTGCTTTTCTGGCGCAATAATATTGAAGATGAATTATGGCTTTCAAGGTCACTATTTGTAATTGGAGGACATTTGCTTGTGTGCATTGAAGACTTCATGCAATTTAGCGCTCTTTCAATAGATGCATCTTCATCAACATATTTCTCCCTTGATTCATGCTGCTCCATCACTGATGTATCTGAAATGGTGATTGAGGCGAGGGAGAGTCAGTGTGTTACCTTGGCTCTTGTACGAGCCACGTCAGAGTTGTGCCCATCAACCAACACAGACAAGGAGCAGGTGGGACTTGATAAAGAAAAGACAGCTTCGGGGTCTCTGACATGGAAGCTCAAGTGGTTCTCAGAAGAGAGTCTATTCAAGTTTGTGGCACTCTTTAAGGCAATCCATGCAGGAGCCACCATGTCCCCTTTACCAGTAAGATGTATATCATAA 2979 42.87 MAIVTGDRYLESLALHELESLLAGAPVDYLRAYISDLGDHRALEQLRRILRLLTSLKVVSVLPPSVRDPTRLSLLPFGRLRVLELRGCDLSTSAARGLLELRHTLEKIICHNSTDALRHLFASRIVAIKDSPQWKRLSFVSCACNGLLLMDESLQLLPAVETLDLSRNKFSKVDNLRKCTKLKHLDLGFNHLRTISSFSEVSCHIVKLVMRNNALTTLRGIENLKSLEDLDLSYNVISNFSEIEILAGLPSLRRLWLEGNPICCARWYRAQVFSFFAHPDKVKLDEMEISTREFWKRQIIIASRQKRPASFGFYYPAREDAGEGGISTKRKKLSRLACIETEGSMYICSDQDSVSCDNEVRSKEDNAISDDEAEIVDLMKRVELMKKERSVLWLREFKEWMDLASDSFAEGNKYGSVLDSGTENYMRKKAGQRHLGESSRYVSDSVQASGDESGTDILESNNSFADISIGLVPQYVDRSGESGSMFALRDTGSHLSSDCPGSPPHYQEDLLHRRHILVEDILQLSAESYSVASSDSNTSDSNDLCEVESSVSEVEQSVNEEISNRKNGRYLLDSHAGQASATLKLLKPEQSLQLCSNDFCAGAHDGEIASLSNEEADWLDKKKCKRKPRKIVSVSQNNMVGRAEDSQTLVGNPDFCGGDMEDEQGEQIFGWNFWDGFVDGEQTWPTTGADDFIKNYFNLNIADSSVNETCKQYMRSSCFLELESRYTEREVAILLSSEHKLYVLLVDVTFDGSGTILKLLGCHRLEDVREVLVGVGLQVVRVYIERDAAYMFLTRSMEKSRQLLCTLQVVDSNETCSKCSLRSLEQVQVELFEKHICGGSKISIFQYSLVLFWRNNIEDELWLSRSLFVIGGHLLVCIEDFMQFSALSIDASSSTYFSLDSCCSITDVSEMVIEARESQCVTLALVRATSELCPSTNTDKEQVGLDKEKTASGSLTWKLKWFSEESLFKFVALFKAIHAGATMSPLPVRCIS* 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1793567 1816622 + Vvi17g183 Vvi17g183 778880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g183 992 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Vvi17g183 992 ProSiteProfiles Leucine-rich repeat profile. 159 180 IPR001611 GO:0005515
Vvi17g183 992 PANTHER NISCHARIN RELATED 492 988 - -
Vvi17g183 992 Gene3D Ribonuclease Inhibitor 129 298 IPR032675 -
Vvi17g183 992 SUPERFAMILY L domain-like 143 291 - -
Vvi17g183 992 SMART LRR_typ_2 180 202 IPR003591 -
Vvi17g183 992 SMART LRR_typ_2 157 179 IPR003591 -
Vvi17g183 992 SMART LRR_typ_2 249 275 IPR003591 -
Vvi17g183 992 SMART LRR_typ_2 224 248 IPR003591 -
Vvi17g183 992 ProSiteProfiles Leucine-rich repeat profile. 226 247 IPR001611 GO:0005515
Vvi17g183 992 SMART LRR_sd22_2 157 178 - -
Vvi17g183 992 SMART LRR_sd22_2 179 200 - -
Vvi17g183 992 SMART LRR_sd22_2 224 245 - -
Vvi17g183 992 Pfam Leucine rich repeat 206 262 IPR001611 GO:0005515
Vvi17g183 992 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 14 492 - -
Vvi17g183 992 PANTHER NISCHARIN RELATED 14 492 - -
Vvi17g183 992 MobiDBLite consensus disorder prediction 429 453 - -
Vvi17g183 992 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 492 988 - -
Vvi17g183 992 MobiDBLite consensus disorder prediction 438 453 - -
Vvi17g183 992 Pfam Leucine Rich repeats (2 copies) 160 198 IPR025875 -
Vvi17g183 992 Coils Coil 368 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g183 - - - vvi:100250985 1816.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g183 . . . . . Bpe13g00380 Bma06g00069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010273 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32