Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g184 ATGGCAGCAGCTTCCATTTCCAAAACCCTATCAAAGGGCGCCCGGAGTTTAAAAAACCACTGGATCCCAACTCCATTGTTTCCACATCTATATTCATCCTCTGCCCCTGTCTCAGCTTCTGCATCTGCTTCTGTTTCTTCTGCTTCGTCCGTCTCCTCTCTTACTGAACCTCAATCTTCAGGAGGGGAACAGAGACGGGGTTGGACAAAATGGTTGCTTTTCGTTCCTGGGGCTGTCACCTTTGGCCTTGGAAGTTGGCAGATCTTGAGAAGACAAGACAAGATAAATATGCTGGATTACAGACGAAAAAGATTGGATTTGGAACCCATTCCAGGAAGCAACTTATACTCTCTGAATGAAAAATTGGATTCCCTGGAGTTCAGGAGGGTTAAAGCCAAAGGATTTTTCGATGAGAAGAAATCTATTTACGTGGGTCCACGTTCCAGAAGTATATCCGGAGTGACTGAAAATGGCTACTATCTCATCACACCCCTTATGCCGATTCCTGATGACCCTGATAGTGTGCAGTCACCAATTCTTGTCAATAGAGGATGGGTTCCGCGCAGTTGGCGAGACAAGTTTTTACAAGATCTACCAGTTGATGAACAATCTAAAAATATAGCATCGCCTTCCATTCAAGAGAGTGAAAGGAGCTCTTGGTGGAGGTTTTGGTCTAAAAAGCCTAAAACTGTTGAGGATCAGGTTCCTGCTGTGACTCCTGTGGAGGTTGTTGGAGTAGTTCGTGGAAGTGAGAAGCCTAGCATATTTGTTCCAGAAAATGACCTATGTTCTCGGCAATGGTTTTATGTTGATGTACCTGCAATTTCCCGTGCCTCTGGACTTGCTGAAAATACTATCTACGTTGATGACATAAATGAAAATGTCAATCCCAGTAATCCTTACCCTGTTCCTAAGGAAGTCAGCACATTGATTCGCAGTTCAGTCATGCCACAGGACCATCTAAACTATACATTAACATGGTATTCTCTGTCAGCAGCAGTAACATTTATGGCTTTCAAAAGAATAACGCCAAAAAAGAGCCGGAGATAA 1050 43.71 MAAASISKTLSKGARSLKNHWIPTPLFPHLYSSSAPVSASASASVSSASSVSSLTEPQSSGGEQRRGWTKWLLFVPGAVTFGLGSWQILRRQDKINMLDYRRKRLDLEPIPGSNLYSLNEKLDSLEFRRVKAKGFFDEKKSIYVGPRSRSISGVTENGYYLITPLMPIPDDPDSVQSPILVNRGWVPRSWRDKFLQDLPVDEQSKNIASPSIQESERSSWWRFWSKKPKTVEDQVPAVTPVEVVGVVRGSEKPSIFVPENDLCSRQWFYVDVPAISRASGLAENTIYVDDINENVNPSNPYPVPKEVSTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAFKRITPKKSRR* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1818131 1823808 - Vvi17g184 Vvi17g184 778881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g184 349 PANTHER SURFEIT LOCUS PROTEIN 3 349 IPR045214 -
Vvi17g184 349 PANTHER SURF1-LIKE PROTEIN 3 349 - -
Vvi17g184 349 CDD SURF1 80 337 IPR002994 GO:0016020
Vvi17g184 349 Pfam SURF1 family 74 332 IPR002994 GO:0016020
Vvi17g184 349 ProSiteProfiles SURF1 family profile. 67 348 IPR002994 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g184 K14998 SURF1, SHY1; surfeit locus 1 family protein - vvi:100256138 654.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g184 . Blo16g00110 . . . . . . . Cmo18g00060 . . . . . . . . . . . . . . . . . . . . . Cone2ag0775 . . . . Csa01g00722 Chy12g01390 Cme12g01823 . . . . . . . . . . . . Cma18g00078 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013009 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28