Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g185 ATGGCGAAGGTCAGTAGGACGGGGAGAAACAGAAACCTGGAAACCCTGCTGGTCATGGACAAGTCGGTGAAAATTGAGAACCAGGCTGTCACGCATGAACCCCGGAAAATGATTCCAGGCCAAGGACTGGAGTTTAGTAACCTTTCCTATAGTGTGCCGAAGCAGCAGAAGAAGGATGGCGCGACAATCACCAAAGAAGTTTACCTTCTTAATGATCTTTCTGGCCAGGCAGTTAGAGGTGAAATCATGGCCATCTTGGGGCCTAGCGGGGCTGGAAAATCCACGTTTCTGGACGCCTTGGCTGGGAGGATTGCTCGTGGAAGTCTTGAGGGGTCTGTCAAAATCAATGGAAAGCCGGTTTCCGCAAGCTATATGAAGATGGTTTCTTCTTATGTAATGCAAGATGATCAGCTCTTTGCCATGTTGACAGTCTTTGAGACCCTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCAATTTCCAGATCAGAGAAGAGAAAACGAGTTTTCGAGCTCATTGATCAACTGGGCTTACAGAGTGCAACCCATACATATATCGGCAATGAAGGCAGACGGGGAGTGTCCGGTGGAGAGCGGCGGAGAGTATCTATAGGGATTGATATAATCCACAAGCCACCGCTGCTGTTCCTGGATGAACCCACCTCCGGTCTGGACTCTACAAGCGCTTACAGTGTGGTGGAAAAGGTTCAGGACATTGCAAGAAGTGGTAGCATTGTCCTCATGACCATACACCAACCATCTTTCAGAATCCAGATGCTCCTCGACCGTATCACAGTCCTAGCAAGGGGCAGACTGATATATACTGGAAGACCAACTGATCTTCCTACCTACCTCTCTGCATTCGGAAGACCAGTTCCAGATGGTGAGAACAGCCTTGAATATCTCCTGGATGTGATCAAAGAGTATGATGAATCAACCATAGGAGTTGATCCTCTTGTTCTGTACCAGCGGGATGGCATCAAGCCTGATCAAGTGGCAAGAACCCCTATTCCAAAAACACCCAAGACCCCCAACACTCCTTACAGAAAGACTCCTGCATCACAGCTTTTCAGTCTCCGAAGCCAACCATTTTCGACTGGGAATTCGACTCCTCGGCTAGATGCTCATTACAATGATGATGACGATGATGATTTTGACAACTCCCTTGAAAGAAAAATCGCAACACCAAAGCATTTTCATGGTAAACACAGGGCCAAATTTGCAAATCCATGGCTTCGCGAAGTAGCAGTACTGTCATGGCGGAACATACTCAATATCATCCGCACCCCAGAGCTCTTCCTCTCCCGTGAGATCGTTCTGTTGGTTATGGCTCTCATCCTCTCTTCTCTCTTCCCAAACCTGGGAGACGATAGCTTGAAGACAGTGAACCGGCTTCTTAATTTCTATATCTTTGCAGTCTGTCTTGTCTTCTTCTCTTCCAATGATGCCGTTCCAACCTTCATCCAAGAGCGATTTATCTTCATGAGAGAAACAGCCCACAATGCATACCGGGCTTCTTCTTACGTCGTATCGTCCCTCATTGTCTACCTCCCGTTTTTTGCCATTCAGGGCCTCACGTTTGCCATGATCACCCGGTATATACTCCACCTGAAAAGCGACGTCATCTTCTTCTGGCTAATCCTTTATGCATCACTCATCACCACAAATGCTTATGTGATGCTTGTTAGCGCACTGGTGCCAAGCTACATCACAGGTTATGCTGTCGTCATTGCCACCACTGCTCTTTTCTTCCTATCTTGTGGGTTCTTCTTGAAGCGAACTAAAATACCCAACTACTGGATCTGGCTCCATTACATATCTGCAATCAAATACCCATTTGAAGCATTACTGATAAATGAGTTCCAAGGCACCCGCTGCTACAAGGGATCTCCTGCTGATCTTTCGCCAGGCCCTCTTGGTAACTTGAACTACAGCCCAGAGCACAACAAATTTGTATCAATAAACTGCACATTGATAGGTGATGATATTCTGTCCTCCATGGATCTTCAGTTGAAGAACATTTGGTATGATATTGCTATCCTGTTGGGGTGGGGAGTTCTTTACCGCCTCTTCTTCTACGTGGTTCTGAGATTTTACTCCAAGAATGAGAGGAAATGA 2118 46.79 MAKVSRTGRNRNLETLLVMDKSVKIENQAVTHEPRKMIPGQGLEFSNLSYSVPKQQKKDGATITKEVYLLNDLSGQAVRGEIMAILGPSGAGKSTFLDALAGRIARGSLEGSVKINGKPVSASYMKMVSSYVMQDDQLFAMLTVFETLMFAAEVRLPPSISRSEKRKRVFELIDQLGLQSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPPLLFLDEPTSGLDSTSAYSVVEKVQDIARSGSIVLMTIHQPSFRIQMLLDRITVLARGRLIYTGRPTDLPTYLSAFGRPVPDGENSLEYLLDVIKEYDESTIGVDPLVLYQRDGIKPDQVARTPIPKTPKTPNTPYRKTPASQLFSLRSQPFSTGNSTPRLDAHYNDDDDDDFDNSLERKIATPKHFHGKHRAKFANPWLREVAVLSWRNILNIIRTPELFLSREIVLLVMALILSSLFPNLGDDSLKTVNRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFMRETAHNAYRASSYVVSSLIVYLPFFAIQGLTFAMITRYILHLKSDVIFFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLSCGFFLKRTKIPNYWIWLHYISAIKYPFEALLINEFQGTRCYKGSPADLSPGPLGNLNYSPEHNKFVSINCTLIGDDILSSMDLQLKNIWYDIAILLGWGVLYRLFFYVVLRFYSKNERK* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1830226 1832876 + Vvi17g185 Vvi17g185 778882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g185 705 CDD ABCG_EPDR 40 276 - -
Vvi17g185 705 Pfam ABC-2 type transporter 415 621 IPR013525 GO:0016020|GO:0140359
Vvi17g185 705 PANTHER ABC TRANSPORTER 401 699 - -
Vvi17g185 705 PANTHER ABC TRANSPORTER 2 400 - -
Vvi17g185 705 Gene3D - 42 286 IPR027417 -
Vvi17g185 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 285 IPR027417 -
Vvi17g185 705 SMART AAA_5 79 279 IPR003593 -
Vvi17g185 705 Pfam ABC transporter 70 222 IPR003439 GO:0005524
Vvi17g185 705 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524
Vvi17g185 705 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 400 - -
Vvi17g185 705 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 401 699 - -
Vvi17g185 705 MobiDBLite consensus disorder prediction 331 350 - -
Vvi17g185 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 294 IPR003439 GO:0005524
Vvi17g185 705 MobiDBLite consensus disorder prediction 360 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g185 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100266434 757.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28