Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g186 ATGCATCTCTTAAGAGGGAAGAATAGAGATAAATGTGGTTGTGGCACTTCAGACCATGGGGAACATGTTGATGCCAAAAAAACAAATCTATGTAGTGAAGATGACAAGTTTGAGGATGATATTGTTGAGTCTGATATTGAATTGGATGACACTGATGTTGTGGAGCCTGATAATGATCCTCCACAAAAGATGGGAGATCTGTCAATTGATGTAACCGAAGAAAATCAGGATGCTGCACAAATGTTGAAATCAAAAGCCATGGAGGCCATTTCTGAAGGAAAGCTAGATGAAGCAACAGATAATCTAACAGAAGCCATCATGTTGAATCCAAGTTCAGCAATATTATATGCAACTAGAGCTAGTGTCTATGTTAAGCTGAAGAAACCAAATGCTGCAATCCGTGATGCTGATGCAGCTTTAAAGATCAACCCTGACTCTGCAAAAGGATATAAAATACGAGGAATGGCGAGGGCCATGTTGGGCCTGTGGGAAGAAGCAGCAACTGATTTGCATGTGGCATCAAGGCTAGATCACGATGAGGAGATTGCTTTGGTTCTTAAAAAGGTTGAACCTAATGCACACAAGATTGAGGAGCATCGCAGAAAATATGCACGGTTGTGCAAAGAGAGGGAGCTAAGAAAATCTGGGCATCAGAAGCAACAGCAGCAAGCTCAACCCCATGATTCAGAAGCTGCAGCTGCTTTTAAGGATGGCCAAGTAATGGCAATTCATTCTTCTTCTGAACTGGAAACTAAGTTAAAAGCTGCTTCGAAGACGTCTCGCTTGGCAATCCTGTATTTCACTGCAACATGGTGTGGGCCTTGTCGTTATATTTCTCCCGTCTTTACAAGCCTATCAGGAAAGTACCCAAAAGTTGTTTTCTTGAAAGTTGACATAGATGGTGCCCAGGATGTGGCTGTAAGCTGGAATGTTAGCAGTGTTCCAACTTTCTTCTTCATAAAAAATGGCAAGGAGATTGATAAAGTGGTAGGGGTTGACAAAAGTGCACTTGAAACAAAGATTGCACAATATGCAGGCCAATCTTAA 1047 41.74 MHLLRGKNRDKCGCGTSDHGEHVDAKKTNLCSEDDKFEDDIVESDIELDDTDVVEPDNDPPQKMGDLSIDVTEENQDAAQMLKSKAMEAISEGKLDEATDNLTEAIMLNPSSAILYATRASVYVKLKKPNAAIRDADAALKINPDSAKGYKIRGMARAMLGLWEEAATDLHVASRLDHDEEIALVLKKVEPNAHKIEEHRRKYARLCKERELRKSGHQKQQQQAQPHDSEAAAAFKDGQVMAIHSSSELETKLKAASKTSRLAILYFTATWCGPCRYISPVFTSLSGKYPKVVFLKVDIDGAQDVAVSWNVSSVPTFFFIKNGKEIDKVVGVDKSALETKIAQYAGQS* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1833036 1848019 - Vvi17g186 Vvi17g186 778883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g186 348 ProSiteProfiles Thioredoxin domain profile. 221 346 IPR013766 -
Vvi17g186 348 SMART tpr_5 113 146 IPR019734 GO:0005515
Vvi17g186 348 SMART tpr_5 147 180 IPR019734 GO:0005515
Vvi17g186 348 SMART tpr_5 79 112 IPR019734 GO:0005515
Vvi17g186 348 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vvi17g186 348 Pfam Thioredoxin 257 342 IPR013766 -
Vvi17g186 348 SUPERFAMILY TPR-like 72 187 IPR011990 GO:0005515
Vvi17g186 348 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g186 348 MobiDBLite consensus disorder prediction 211 230 - -
Vvi17g186 348 Gene3D Glutaredoxin 215 347 - -
Vvi17g186 348 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TDX 33 346 - -
Vvi17g186 348 MobiDBLite consensus disorder prediction 45 65 - -
Vvi17g186 348 PANTHER HSC70-INTERACTING PROTEIN 33 346 - -
Vvi17g186 348 CDD TRX_family 253 342 - -
Vvi17g186 348 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
Vvi17g186 348 Gene3D Tetratricopeptide repeat domain 40 213 IPR011990 GO:0005515
Vvi17g186 348 ProSitePatterns Thioredoxin family active site. 264 282 IPR017937 -
Vvi17g186 348 SUPERFAMILY Thioredoxin-like 202 346 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g186 K09560 ST13; suppressor of tumorigenicity protein 13 - vvi:100268081 657.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g186 . . . Bda15g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0774 . . . . . . . . . . Bda14g01105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017221 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6