Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g188 ATGGAGAGAGATTTCTTGTGTTTGGGGTCGGGGAAAGTTTTGCCATCGGGGAAGGAGGAATCCGGTGATTCAGTGCCTGCTAGAGGGTTGGGGATGCAGTGGCCCTTCCCCAACAAGGTTTCAGCCATTCCTCATTTTCTGTCCTTTAAGGCAGTTCAAGAAGATAGGCCTAGAAGGAGTGTGTATGATCGTCCCTTTGCATCATCTGGGCTAATGTCTGTATCCACTGCAGATGCACTTGAATCTAACCAGCAACCACACCCTGGTGTTTTGCAGAAAAATTTGAATCTTGAAAAGCAAGTGGGAAGCCAGTTTGTAATGACAGGCTATCCTCTTCAACACTTAGATGCACGGTCAGTCCGCCGTGCTCATGAAGTCGGGAAATTCCCAGCCTCCAACCAACCAAACCATTCCATTTCTGTTGCTTTTAGCAACCCAGTTCTCCAATCTCAAATTGCTTTCAGTGGACCCAGTGTGGGCAGTTCTGCTGTAAAGCCACAGCCTCTTGGAGGCGTTCCAGTAGCAGCCCCTGGTTCCTATCCTACCATCTGTTCCTTCATTGGTACTACTGATCAAAAGAATGCTTCCAAGCCCCCTGGGCCAGCTACTCAGCTGACTATCTTTTATGCCGGTTCAGTGAATGTTTTTGATGGCATCTCTCCTGAGCAGGCTCAGGCTATTATGTTATTGGCTGGAAATGTCCCTCCTGTAAGTCCCAATACTACACTTCCCGCATCTCAAGGACAGGGACCGATCATAATGCCCTCTGGAGGTGATGGTTTTATGGGGAACCAAGCTCATACTTCACAACCTGGCTCAGGGAAAACAAAAGGAGCTTTGACATCTACCAACCAACCAGAGCCTCCCAACGTAGTCACTTCACTAGGATCCACTACTCCAACCTATATTCCAGCAGTACCTCAGGCTCGTAAAGCATCATTGGCTAGATTTTTAGAGAAGCGCAAAGAGAGGTGCCAGACTCCATCCCAAAGTTATTCTGCCATACCAAAGAGGTTCAGCTGTAGGATGATGAGCGCATCGCCCTATAATGGCAGCACCCCTGCATCAAATGTTGTTGGTTTCTCCATGAATTCTGCACTCTGCTAG 1107 48.24 MERDFLCLGSGKVLPSGKEESGDSVPARGLGMQWPFPNKVSAIPHFLSFKAVQEDRPRRSVYDRPFASSGLMSVSTADALESNQQPHPGVLQKNLNLEKQVGSQFVMTGYPLQHLDARSVRRAHEVGKFPASNQPNHSISVAFSNPVLQSQIAFSGPSVGSSAVKPQPLGGVPVAAPGSYPTICSFIGTTDQKNASKPPGPATQLTIFYAGSVNVFDGISPEQAQAIMLLAGNVPPVSPNTTLPASQGQGPIIMPSGGDGFMGNQAHTSQPGSGKTKGALTSTNQPEPPNVVTSLGSTTPTYIPAVPQARKASLARFLEKRKERCQTPSQSYSAIPKRFSCRMMSASPYNGSTPASNVVGFSMNSALC* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1857306 1861479 - Vvi17g188 Vvi17g188 778885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g188 368 PANTHER PROTEIN TIFY 6A-RELATED 26 365 - -
Vvi17g188 368 Pfam tify domain 202 232 IPR010399 -
Vvi17g188 368 Pfam Jas motif 307 332 IPR018467 -
Vvi17g188 368 ProSiteProfiles Tify domain profile. 198 233 IPR010399 -
Vvi17g188 368 MobiDBLite consensus disorder prediction 264 290 - -
Vvi17g188 368 SMART tify_2 198 233 IPR010399 -
Vvi17g188 368 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 365 IPR040390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g188 K13464 JAZ; jasmonate ZIM domain-containing protein - vvi:100245759 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g480 Vvi17g188 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g188 . . . . . . . . Cmo13g01016 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0772 . . . . . . . . . . . . . . Bma08g00104 . . . Cma13g00982 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14178 PF06200 tify 1.60E-16 No_clan Vvi TF