Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g189 ATGTCTCAGGCTCGGAGGGCTGAGTTGACTCAGATTTTCAAAAGCTTGTCTCGACAGCCATGGCCAACCTTGAGAACCCCCAATTCTCTTGTCCTAAAACGACACCGGTTCTCTCGTCTTTCTGTTTCTCCCAGAAAGCGACAACTCCATCTCTTCCACCAGACTCTAGCAAAAAGAAGCATCAGAAGTCGGGGTCTTTATCGCATTGTCTACATGGCTATGTATATACGTGTTAAACGCAGTAAGACAACCTACTTTCTACAGTGTGATCCAACTGAGACAATTCTAGATGTTAAGCAGAAATTGCATACCCTCATTGATCAACCAATCAATGATCAGCGTTTGATCTTAGTAGGAACTGGGGAAATATTAGATGATTCCAAAACGTTGGCAGATCAGAAGGTCGAAAATGATGCTGTTGTGGCACTGACATTGAGAAAAGATGACAATGAATTTGAGGATGTCAACATCGTGCGGCCAAATGATGATTTCTATCAGTCTCGTGATCCAGATGGCAGTTGGTAA 525 43.24 MSQARRAELTQIFKSLSRQPWPTLRTPNSLVLKRHRFSRLSVSPRKRQLHLFHQTLAKRSIRSRGLYRIVYMAMYIRVKRSKTTYFLQCDPTETILDVKQKLHTLIDQPINDQRLILVGTGEILDDSKTLADQKVENDAVVALTLRKDDNEFEDVNIVRPNDDFYQSRDPDGSW* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1867712 1882977 - Vvi17g189 Vvi17g189 778886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g189 174 SUPERFAMILY Ubiquitin-like 72 150 IPR029071 -
Vvi17g189 174 Pfam Ubiquitin family 76 147 IPR000626 GO:0005515
Vvi17g189 174 ProSiteProfiles Ubiquitin domain profile. 72 150 IPR000626 GO:0005515
Vvi17g189 174 PANTHER OS03G0364000 PROTEIN 72 172 - -
Vvi17g189 174 CDD Ubl_ubiquitin_like 76 143 - -
Vvi17g189 174 SMART ubq_7 74 146 IPR000626 GO:0005515
Vvi17g189 174 Gene3D - 72 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g189 K03873 ELOB, TCEB2; elongin-B - vvi:100244093 210.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009538 1 2 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 1 2 4 1 32