Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g19 ATGAATGCGAGGAAGCCCAAGGTGGAGGTAGATGATCGGATCACGACGGAAGAGGACGGCGAAGAAAACTCCAGAGACGAGCAAGAAGAAGCATTGGTGGCTCTGATCGAGCACCGCACCAAAGAAGTCGAACATATCCGCAAGCGCATAACCTATTACCAATCTCAGCTTCAAGAAGCAGAAAAGAAGTTACTTGATTCACAAGCTCAGTTGGGTCGACTGCGATCAAAAGACAATCTGGTATCGTCTAGGAGCCCTCTGGATAATGGAACTAAAAAAGTGAAAGTGGAGCGTAGATCAACTAGTCCTCTGCAACTTCAATCAAGGCCAGAACTTTTAATTCCTGCTGTGAATCCAAAAATTTCCCAACCTGTAAAATTGGCGGATGCTGGCACTCGAGCTAGATCACCGACTCCCAATCATGCTCATAGTGTGGGAAAAGTGAAATGGGAAAAGTCTCATGGAAGCTCATCTGAGCGGGAAATGGTTGAAGTGCAAGATAAAGGGACAAAAAGGAAGTTTGAACCAAAAGAGCACAAAGAATTGATTACATCCATAGCTACCTCTTCTTCTCCAGTTATTGTCCGCTGTTATTCGAGCTCTCACATCTCCAGTCAGCATAAGAGAAAGTTGAGAAGTCTTGTTCTGTGTCCAGTTAACAATCAGCTTTTCGCTACCAGTGCTTTGGATGGAATAGTCAACTTGTGGCAAATTCAGGCCAGAGGATCAGGGGCCTCTCTACTTAGTGCTACTGATTGTTTATCACAAAAGCAAAGGAGATGGCCAGAAGATATGGCCTGGCACCCAGAAGGAAACAGCATATTTTCTGTATACAACGCTGATGATGGGGATTCTCAGATATCAGTCCTAAATCTGAATAGAACAAAAGGGGGAGCACGCGTGACTTTCCTAGAGGAGAAGCCTCATGTTAAAGGCATCATCAACAGTATAAGTTTCATGCCCTGGGAAAATCCATGTTTTGTTACTGGTGGTAGTGATCACGCTGTTGTACTTTGGAATGAGAAAGACGAGGAGAAATTATGGAAACCAAAGGCGTTGCACAGGAATATGCACTCTTCTGCTGTCATGGGAGTTGCTGGGATGCAGCAAAAGCAGATTGTATTGTCTGTTGGTGCGGACAAGAGAATTATTGGGCTTGATTTACATACAGGAAGAACAGATTTCAAGCATCAGATTGATAGCAAATGCATGAGCATTGTCCCTAATCCATGTGATTTCAATTTATATATGGTTCAGGCAGGGACTCCTGGGAAGCAGCTCCGATTGTTTGATATTAGATTGAGGCAAACAGAACTCCATGCATTTGGGTGGAAACAAGAAAGCAGTGACTCCCTGTCAGCCCTGATAAATCAGACATGGTCTCCTGATGGTTTATACATCACCTCTGGTTCAGTAGACCCTGTGATCCATATCTTTGATATAAGGTCTTATGCTCACAAACCTTCACAATCAATTAAAGCTCATCAAAAACGAGTCTTCAAAGCTATATGGCACCATTCTCTCCCCCTTCTCATTTCGATATCTTCTGATCTGAACATTGGACTGCACAAACTCTCATGA 1581 43.64 MNARKPKVEVDDRITTEEDGEENSRDEQEEALVALIEHRTKEVEHIRKRITYYQSQLQEAEKKLLDSQAQLGRLRSKDNLVSSRSPLDNGTKKVKVERRSTSPLQLQSRPELLIPAVNPKISQPVKLADAGTRARSPTPNHAHSVGKVKWEKSHGSSSEREMVEVQDKGTKRKFEPKEHKELITSIATSSSPVIVRCYSSSHISSQHKRKLRSLVLCPVNNQLFATSALDGIVNLWQIQARGSGASLLSATDCLSQKQRRWPEDMAWHPEGNSIFSVYNADDGDSQISVLNLNRTKGGARVTFLEEKPHVKGIINSISFMPWENPCFVTGGSDHAVVLWNEKDEEKLWKPKALHRNMHSSAVMGVAGMQQKQIVLSVGADKRIIGLDLHTGRTDFKHQIDSKCMSIVPNPCDFNLYMVQAGTPGKQLRLFDIRLRQTELHAFGWKQESSDSLSALINQTWSPDGLYITSGSVDPVIHIFDIRSYAHKPSQSIKAHQKRVFKAIWHHSLPLLISISSDLNIGLHKLS* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 144883 156662 - Vvi17g19 Vvi17g19 778716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g19 526 MobiDBLite consensus disorder prediction 76 107 - -
Vvi17g19 526 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g19 526 Coils Coil 43 77 - -
Vvi17g19 526 MobiDBLite consensus disorder prediction 131 171 - -
Vvi17g19 526 Pfam WD domain, G-beta repeat 458 480 IPR001680 GO:0005515
Vvi17g19 526 Gene3D - 353 526 IPR015943 GO:0005515
Vvi17g19 526 Gene3D - 176 352 IPR015943 GO:0005515
Vvi17g19 526 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 15 525 - -
Vvi17g19 526 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 15 525 - -
Vvi17g19 526 SUPERFAMILY WD40 repeat-like 209 524 IPR036322 GO:0005515
Vvi17g19 526 SMART WD40_4 300 340 IPR001680 GO:0005515
Vvi17g19 526 SMART WD40_4 485 524 IPR001680 GO:0005515
Vvi17g19 526 SMART WD40_4 197 237 IPR001680 GO:0005515
Vvi17g19 526 SMART WD40_4 349 387 IPR001680 GO:0005515
Vvi17g19 526 SMART WD40_4 445 480 IPR001680 GO:0005515
Vvi17g19 526 MobiDBLite consensus disorder prediction 1 29 - -
Vvi17g19 526 MobiDBLite consensus disorder prediction 145 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g19 - - - vvi:100255948 1046.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g19 . . . Bda15g00699 Bpe12g00456 . . . . . . . . . . Cpe20g00288 . Bhi02g00609 . . . . . . . . . . . . . . . . . Lsi02g00529 Csa01g00992 Chy12g01142 Cme12g01560 . . . . . . . Bma08g00282 Sed01g1537 . . . . Car13g00674 . . . Bhi08g01542 Tan05g3013 Cmetu12g1640 Lac10g0615 Hepe07g2080 . . Cla03g00381 Cam03g0400 Cec03g0386 Cco03g0401 Clacu03g0399 Cmu03g1004 Cre03g0696 . Csa01g00007 Chy02g02707 Cme02g02115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002709 1 5 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 3 2 1 57