Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g190 ATGATTTTTTGCATTTATTTTTTGTTAGGGTTTATACTCCTTCCTCTCCCCTACTGCCCTCCGAACCCTAATACTAACCCAAAATTCAGATTCCTAAACCCTAAAAGACCCTTATATTGTCAGCCCAAAACCCTCCAAATCCAGTGTGCTAAGAGAACTGGAAAGCAGAGGTACCCATCCGAGAAGAAGAAGCTCAAGCTGAAACACAAAGCCCTCACTCATGTCAATGACAAATTTCAAGGCATTTGGAGGCTTTCCAAGCTTGGTGTTCCACTTCACTTGGACCCCGGAAAGGATTTTCTTGACGTTTCTGAGGGCTTGCTCCAAGAAATTGCCAAAGTTCTCAAATTCCCGGTTGCTTCTATGCTTCCCCCAGAGGCATTCTTGGTTGTAAGGAAGTCTTTTGATGCAAGGAAGGTGCTGAAGGAGCCCAAATTTGTTTATACGGTTGAAATGGATGTCCATAAGCTCCTGACTCTAGAGCCTCGTACATGGGACTTCATTTCTCGAGAGAGCATTTACAAGGAGGGATCAGATGACTTCCCAGGATCTAGAAGGCCAAAAGTTGCTGTTGTGGGTAGTGGACCATCGGGCTTGTTTGCTTGTCTTGTTCTTGCAGAACTCGGTGTAGATGTTACTATAATAGAAAGAGGTCAAGCAGTTGAGCAAAGGGGGCGTGATATTGGTGCCTTGATGGTTCGTCGGATTTTACAATTGGAAAGCAATTTTTGCTTTGGGGAGGGTGGTGCAGGTACCTGGAGTGATGGAAAGTTGGTGACTAGAATTGGAAGGAATAGTGGCAGTGTTCTGGCGGTTATGAAAACTTTAGTTCACTTTGGAGCTCCAGAAAGTATCTTGGTTGATGGGAAGCCTCATTTGGGAACAGATAGGCTGATTCCATTACTCCGCAACTTTCGACAACATCTAGAAAGCTTGGGTGTTACCATCAGGTTTGGGACTAAAGTTGATGATCTGGTTGTAGAGGATGCTAATGTTGTGGGAGTTGAAGTTTCTGATTCAAGAGAAAAATCAGAGCATAATAGTCAGAAGTTGAGATATGATGCAGTTGTTTTAGCAGTAGGGCATTCTGCACGTGATGCATACCAGATGCTTCTGTCTCATAATATGGATTTGGTCCCAAAAGATTTTGCTGTTGGCTTGCGGATTGAGCATCCTCAGGAACTAATAAACAGCATACAGTATTCAAGCTTGGCTGCTGAGGTTCACAAGGGACGTGGAAAAGTTCCTGTTGCAGATTACAAGGTTGTCAAGTATCTCCAGGGAGAAGATGGAGACACATCCTTTGATTCAGGGGCAACAAGTCGTAGTTGTTATTCCTTCTGCATGTGTCCTGGCGGACAGGTTGTTCTCACTAGTACGAATCCATCAGAAATTTGTATCAATGGCATGTCATTTTCTCGGCGTGCCTCCAGGTGGGCAAATGCAGCACTTGTCGCCACTGTCTCATCAAAGGATTTCGGGGCATTGAATTGTGATGGACCCCTTGCAGGGGTTGAATTTCAGAGGGAATTTGAGCGAAGAGCAGCCATGATGGGAGGCGGAAATTTTGTGGTGCCTGTTCAGACAGTCACAGATTTTATGGAAAACAAATTGTCAGTAACATCTGTACCACCATCAAGTTATCGGTTAGGAGTCAAGGCAGCCAATCTCCATGAGTTGTTCCCCTTACATATAACAAAGGCTTTGCAGCACTCAATCTCAATGTTTGATGAAGAGTTACCTGGATTTATATCCAAAGACGCCTTGCTCCATGGAGTCGAGACAAGAACCAGCTCCCCCATCCAAATTCCTCGTAACAGTGACACATATGAAAGCACATCACTGAGAGGACTCTACCCCATTGGAGAAGGAGCAGGCTATGCTGGTGGAATTGTCAGTGCAGCAGTTGATGGCATGTATGCTGGCTTTGCTGTGGCAAAAAGTCTAGGTTTGTACTCCGGTGACATCGAGTCAATTCTGGGCAAGGCTCAGTATGGTGGATGGGCAAAGTATTGA 2016 44.99 MIFCIYFLLGFILLPLPYCPPNPNTNPKFRFLNPKRPLYCQPKTLQIQCAKRTGKQRYPSEKKKLKLKHKALTHVNDKFQGIWRLSKLGVPLHLDPGKDFLDVSEGLLQEIAKVLKFPVASMLPPEAFLVVRKSFDARKVLKEPKFVYTVEMDVHKLLTLEPRTWDFISRESIYKEGSDDFPGSRRPKVAVVGSGPSGLFACLVLAELGVDVTIIERGQAVEQRGRDIGALMVRRILQLESNFCFGEGGAGTWSDGKLVTRIGRNSGSVLAVMKTLVHFGAPESILVDGKPHLGTDRLIPLLRNFRQHLESLGVTIRFGTKVDDLVVEDANVVGVEVSDSREKSEHNSQKLRYDAVVLAVGHSARDAYQMLLSHNMDLVPKDFAVGLRIEHPQELINSIQYSSLAAEVHKGRGKVPVADYKVVKYLQGEDGDTSFDSGATSRSCYSFCMCPGGQVVLTSTNPSEICINGMSFSRRASRWANAALVATVSSKDFGALNCDGPLAGVEFQREFERRAAMMGGGNFVVPVQTVTDFMENKLSVTSVPPSSYRLGVKAANLHELFPLHITKALQHSISMFDEELPGFISKDALLHGVETRTSSPIQIPRNSDTYESTSLRGLYPIGEGAGYAGGIVSAAVDGMYAGFAVAKSLGLYSGDIESILGKAQYGGWAKY* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1883949 1899856 - Vvi17g190 Vvi17g190 778887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g190 671 Pfam FAD binding domain 301 370 IPR003953 -
Vvi17g190 671 SUPERFAMILY FAD/NAD(P)-binding domain 188 648 IPR036188 -
Vvi17g190 671 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE 180 671 IPR028348 -
Vvi17g190 671 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE 45 171 IPR028348 -
Vvi17g190 671 Pfam FAD binding domain 188 226 IPR002938 GO:0071949
Vvi17g190 671 Gene3D - 179 405 IPR036188 -
Vvi17g190 671 Gene3D - 589 651 IPR036188 -
Vvi17g190 671 PRINTS Adrenodoxin reductase family signature 188 210 - -
Vvi17g190 671 PRINTS Adrenodoxin reductase family signature 355 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g190 - - - vvi:100249260 1279.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011432 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31