Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g192 ATGTCAATAGAGATCAAACTTTTCCGACCTAACCGCATCTATTTTCCCGCCGAACCTCTTGAAGGCAAAATCATCCTGAAGTCACCCTCTTCAATTTCTCACTATGGGATTCGCCTCACTCTCGATGGATCCGTCAACCGACAGGTTCGGGGAGGCTCAGCAGGAGCAATTGAGGCCTTGTATGGTGCTGTCAAGCCTATACGCATTGTGAACAAGAGTGTTGAGATTAGACCTGCCGGAAAGATTGGTTCAGGTACAACTGAGATACCATTTTCTGTAATTCTGAGGCAGCAAGGAGATGATAGATTTTATGAAACCTTCCATGGGGCAAATATCAGCATCCAGTATCTGGTAACTGTAGATGTAATGAGAGGATACCTATATAAATCATTATCTGCTACAATGGAGTTTATAATTGACAGTGATAAAGCTAATCTTTTTGAGCCACCAGTTCCTCCTGAAATGGTTATCTTCTACATCACTCAGGACACACAAAGACATCCACTGCTTCCTGAGTTAAGATCAGGTGGATTTCGAGTGACTGGAAAAGTGTCCTCTCAGTGTTCTTTGTTAGATCCTATCAGCGGTGAGCTAATAGTAGAAGCATCTGCAGTTCCCATTCATTCCATTGATCTTCAACTGCACCGTGTAGAGTCAATTCTTGTTGGAGAGAAGATTGTAACTGAAAGCTCTTTGATTCAGACAACGCAGGCATCAGATGGAGATGTGTGTCGTAGAGTGACCATTCCAATCTATGTTATTCTTCCTCGTCTTTTGACTTGTCCGACAGTCTTAGCTGGTCCATTTTCAATTGAGTTCAAAATCTCCATCGTCATTACCTTCGAGTCAGAACTGGTGAAACTGCATCCAAAATCCGATCCCAAAACTCCCAGACTCTGGCTGGCAATGGAAACTATACCACTGGAACTGATTCGAACAAAGTGA 945 43.07 MSIEIKLFRPNRIYFPAEPLEGKIILKSPSSISHYGIRLTLDGSVNRQVRGGSAGAIEALYGAVKPIRIVNKSVEIRPAGKIGSGTTEIPFSVILRQQGDDRFYETFHGANISIQYLVTVDVMRGYLYKSLSATMEFIIDSDKANLFEPPVPPEMVIFYITQDTQRHPLLPELRSGGFRVTGKVSSQCSLLDPISGELIVEASAVPIHSIDLQLHRVESILVGEKIVTESSLIQTTQASDGDVCRRVTIPIYVILPRLLTCPTVLAGPFSIEFKISIVITFESELVKLHPKSDPKTPRLWLAMETIPLELIRTK* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1903891 1909337 - Vvi17g192 Vvi17g192 778889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g192 314 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26C 3 312 - -
Vvi17g192 314 Gene3D - 181 289 IPR014752 -
Vvi17g192 314 SUPERFAMILY E set domains 3 172 IPR014756 -
Vvi17g192 314 Pfam Vacuolar protein sorting-associated protein 26 11 282 IPR028934 GO:0006886
Vvi17g192 314 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 3 312 IPR028934 GO:0006886
Vvi17g192 314 Gene3D - 3 141 IPR014752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g192 K25730 VPS26C; vacuolar protein sorting-associated protein 26C - vvi:100259471 612.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g192 . . . . . . . . Cmo13g01020 . . . . . . Cpe20g00157 . . . . . . . . . . . . . . . Cone2ag0768 . . . Lsi02g00239 Csa01g00720 Chy12g01392 Cme12g01826 . . . . . Bpe15g00506 Bma03g00922 . . . . Cma13g00985 . Car13g00821 . . . . . . . . . . Cla04g01041 Cam04g1086 Cec01g1599 Cco01g1647 Clacu04g1112 Cmu04g1095 Cre01g1394 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009617 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 32