Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g193 ATGATCGCTGCTGCTAGCTCTGGCGGACCGAGGGTCATGGAGGAGGCGGCATCGGAGATTGAAGCGGCCGCGACAGCGGGGAACCCCCTTGCGCAGTCGGCGTTAGGGTTTTTGTATGAGACGGGCATGATGAGGGAGAGGAACAAAGCCAAGGCGTTTATGTATCATTACTTTGCTACCGATGGCGGTAACACGCAGTCTAAGATGGTTCTTGCCTACACTTACTCGCGCCAAGATATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGCTCCATAATGGAGCTGAAGAGAACAAAGAGGCCCTGAGGAAGTCTAGAGGGGAGGAAGATGAAGACTTCCAGATCTTGGAATACCAGGCTCAAAAAGGGAATGCAGCAGCTATGTATAAAATTGGGATATTTTACTACTTTGGATTGAGAGGATTGAGGCGTGATCGTGCCAAGGCATTGTTGTGGTTTCTAAAGGCTGTGGAGAAGGGGGAGCCAAGGTCCATGGAACTTCTTGGGGAGATTTACGCAAGGGGAGCTGGTGTTGAGAGGAACTACACTAAGGCGTTGGAATGGCTAACGCTCGCATCCCAACGACTCCCTTCAGCTTATAACGGGATGGGGTATTTATATGTGAAAGGTTACGGAGTGGAAAAGAAGAACTACACCAAAGCAAAAGAATACTTTGAGAAGGCTGTTGATCATGATGAGGCTGGTGGGCACTATAACCTAGGTGTAATGTATCTCAAAGGAGTTGGAGTAAAAAGGGATGTGAAGCTAGCTTGCAATTATTTTATAATGGCAGCTAAAGAAGGGCAGCCAAAGGCATTTTACCAGTTGGCAAAGATGTTCCATACTGGTGTGGGGCTTAAGAGGAATCTTCCTATGGCTACTGCATTATACAAACTAGTTGCAGAACGGGGACCATGGAGTTCCTTGTCTAGATGGGCACTGGAGTCATACCTAAAAGGTGATGTGGGGAAGGCGTTCCTCTTGTACTCTAGGATGGCTGAGCTAGGCTATGAGGTGGCACAAAGTAATGCTGCATGGATTCTTGACAAATATAGGGAACGTAGTATGTGCATAGGAGAATCTGGATTTTGTACAGATGCAGAAAGGCTTCAGCGGGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTGCTGATCGGGGATGCTTATTACTATGGTCGGGGTACTGAGAGAGATTATGATCGAGCTGCAAAGGCATACATGCATGCCAAGTCCCAATCCAATGCACAAGCCATGTTCAACCTTGGGTACATGCATGAGCATGGACAAGGACTTCCATTTGATCTTCATCTTGCAAAGCGTTACTATGATCAAGCCCTAGAGATTGATTCTGCTGCAAAATTGCCTGTTACATTGGCTCTTACGAGCTTGTGGATACGAAAGAACTATGCCAGCAGTTTCCTAGTTGACTTGGTCGATTCACTGCCTGAAGTCTATCCAAAAGTGGAAGCATGGGTGGAGAATGTGATCATGGAGGAAGGAAATGCAACAATTCTCACCCTTTTTGTCTGCCTACTGACAGTCCTTTACCTTCGTGAACGACAACGTAGGCATGTGGCTGCTGCTCCAGAGGCAGCCCTGCCACTCCTTCCCAATGAGCACGGTGTACTTGCTGCACCCCATTAA 1731 47.08 MIAAASSGGPRVMEEAASEIEAAATAGNPLAQSALGFLYETGMMRERNKAKAFMYHYFATDGGNTQSKMVLAYTYSRQDMYDKAVELYAELAEIAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYKIGIFYYFGLRGLRRDRAKALLWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLASQRLPSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAVDHDEAGGHYNLGVMYLKGVGVKRDVKLACNYFIMAAKEGQPKAFYQLAKMFHTGVGLKRNLPMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYRERSMCIGESGFCTDAERLQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYDRAAKAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLWIRKNYASSFLVDLVDSLPEVYPKVEAWVENVIMEEGNATILTLFVCLLTVLYLRERQRRHVAAAPEAALPLLPNEHGVLAAPH* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1919254 1930143 + Vvi17g193 Vvi17g193 778890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g193 576 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 1 559 - -
Vvi17g193 576 SMART tpr_5 219 257 IPR019734 GO:0005515
Vvi17g193 576 SMART tpr_5 65 98 IPR019734 GO:0005515
Vvi17g193 576 SMART tpr_5 444 481 IPR019734 GO:0005515
Vvi17g193 576 Gene3D Tetratricopeptide repeat domain 216 333 IPR011990 GO:0005515
Vvi17g193 576 Gene3D Tetratricopeptide repeat domain 334 496 IPR011990 GO:0005515
Vvi17g193 576 Gene3D Tetratricopeptide repeat domain 3 104 IPR011990 GO:0005515
Vvi17g193 576 SUPERFAMILY HCP-like 14 96 - -
Vvi17g193 576 SUPERFAMILY HCP-like 339 479 - -
Vvi17g193 576 Pfam Sel1 repeat 185 215 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 219 254 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 341 359 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 410 432 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 147 182 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 296 326 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 444 476 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 30 63 IPR006597 -
Vvi17g193 576 Pfam Sel1 repeat 259 290 IPR006597 -
Vvi17g193 576 SUPERFAMILY HCP-like 128 238 - -
Vvi17g193 576 SMART sel1 147 183 IPR006597 -
Vvi17g193 576 SMART sel1 219 255 IPR006597 -
Vvi17g193 576 SMART sel1 184 218 IPR006597 -
Vvi17g193 576 SMART sel1 444 479 IPR006597 -
Vvi17g193 576 SMART sel1 29 64 IPR006597 -
Vvi17g193 576 SMART sel1 256 291 IPR006597 -
Vvi17g193 576 SMART sel1 292 327 IPR006597 -
Vvi17g193 576 SMART sel1 408 443 IPR006597 -
Vvi17g193 576 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 1 559 IPR044623 GO:0030433
Vvi17g193 576 SUPERFAMILY HCP-like 237 367 - -
Vvi17g193 576 Gene3D Tetratricopeptide repeat domain 112 215 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g193 K14026 SEL1, SEL1L; SEL1 protein - vvi:100256050 1144.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38