Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g194 ATGGAAAACTTGCTGGGTCTTCTCAGAGTCCGCGTCAAGAGAGGTATCAATCTCGCTGTTCGTGACGTCCGTAGTAGCGATCCTTATGCTGTCATCAAGATGGGGAAGCAGAAACTGAAGACACGTGTAATGAAAAAGAATGTTAATCCTGAGTGGAATGAAGATCTAACTCTTTCTATTTCAGATCCTAATCTTCCAATCAAGCTGACCGTGTATGACCATGACACATTCAGCAAAGATGACAAGATGGGAGATGCAGAATTCACCATCAATCCATATCTAGAAGCTTTACGGATGCATTTGGAAGGTCTCCCCAGTGGTACCATAATTTCAAGAGTACAACCGAGCAGGCAAAACTGCCTGGCAGAGGAGAGCTGCATTGTCTGGACCGATGGCAGGGTTGTCCAAGACATCTGCCTCAGATTGCGAAATGTTGAATGTGGTGAAGTAGAACTCCAACTGCAATGGATCGACCTTCCGGGTTCCAAGGGCCTATAG 498 45.98 MENLLGLLRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSISDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNCLAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1966512 1970126 - Vvi17g194 Vvi17g194 778891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g194 165 CDD C2_ArfGAP 5 148 - -
Vvi17g194 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 1 164 - -
Vvi17g194 165 Pfam C2 domain 6 92 IPR000008 -
Vvi17g194 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vvi17g194 165 SMART C2_3c 7 102 IPR000008 -
Vvi17g194 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Vvi17g194 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
Vvi17g194 165 Gene3D C2 domain 4 163 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g452 Vvi17g194 ECH
Vvi14g752 Vvi17g194 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g194 - - vvi:100261135 332.028