Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g195 ATGGCTCCTCATGCTATTTATGGTAGGGTAGATCAGATATTCACATATCAACCACCTACTGCCAACGGTATAGTCCTGTGTGGGATGGGTGGTGAGGACGACTATAGATTCATGGCCATAGAAGATGCCATGGCCTCACTCAACCAAAAAGTTAACATCATCGGCGTTGTAGTGGAAATGGGCATGCCTAAGCGGTCCAAAGGAACTGATTGTTTTTGTACTGTAAAGATAGTTGATCAATCACACAGGAGTTCTGGGATATCTGTTAATGTTTTTGCTGAAAATATGGAAAAGCTTCCACATGTCGAGTCAGCTGGAGATATTATTCAGTTTTCCCATGTAGTGATGAAGACTCATGGTCAGGATGTAAATGCTGTTTTCAACAAAAAATTCTCTTCATTTGCCATCTTTGAAGGGAAATATGGTGAAGATTTCAGTCCTTATCAAGTTTCTTCAAATTTCCGCCCTAGAGACCAGGACAAGAAGTTTGTAAAAGACTTGAGAAAATGGTTGGCTGATTCTGAAATTGATAAAGGGATGAAAGAACCCCTGTCGTTGAGAGAGATCAGGGAAGGAGAACGTGTTGATTTGTTTTGTAAGATTCTTCATATCTGTGAAGTCACTAAAGATGAGTGGATAATCTTTGTTTGGGATGGAACTGATACTCCTCCAGTTAGTGTCCAGACAGTGCTGGAAGATGAAATGGACAATCCACTTCCTTTACAATTGGAGTCTTTGCCTTTAAGTAGAGATATTTTGTGTACATTTCCTACTGTGGGAACTATATTAAGGGTGATTGTTGATCAAGGCAGTGAGAAGCTTAGCCTCCACTTACTAAAGGTTGGAAAGTGGGTGAGATTTCTCAAAATAATCTGTGAAGTGCAAGCAGGATTGTGGCGTGGTGTGTTGATGCCTTCAACAAAGCTTCGATATATGCCAGATGCTGACCTTCTTGTATCACAACGGCAAAGATTTTATGATGAGCGGCTGTCTTCAAAATGGGAGCGGATGCCATTGTCAAGCTTTCCTTGGCCTTCTCGTATCACAGAGACTGATTATGAGCATGTGCCAGTTGTTACATTGATGGATGTTGTCACCCATTCAGAGGTAACAGCTAAATTCAAGTGTGTAGTTCGAGTTGCAGCAATAGTTCCTTGGCGTGCAGAGGACTTCTGCTCTCCTCCTGGAACATATAGGACGAGGTTGACTCTGGAGGATCCAACTGCCAGAATCCATGCTTTTGTGCATGCTGAAGATGGGGAGAAGTTTTTTGAGGGTTATCCCCCAGTTGATGTGTTGAAAAGGAAACGAAACAAATTGCTGGGCATAGCTGAAAGCGATGACGGCAATGAAATCAATAATGCTCCCAGAAATCCACCATGGGTGCAGTGTTGCATTAAGTCGTATTACCTTGTAAAGGGTGATGTTTGGGGCAGTAGGAGGTATCGAATCTTTGGCACCAGGCTGGTAACGTAA 1476 42.48 MAPHAIYGRVDQIFTYQPPTANGIVLCGMGGEDDYRFMAIEDAMASLNQKVNIIGVVVEMGMPKRSKGTDCFCTVKIVDQSHRSSGISVNVFAENMEKLPHVESAGDIIQFSHVVMKTHGQDVNAVFNKKFSSFAIFEGKYGEDFSPYQVSSNFRPRDQDKKFVKDLRKWLADSEIDKGMKEPLSLREIREGERVDLFCKILHICEVTKDEWIIFVWDGTDTPPVSVQTVLEDEMDNPLPLQLESLPLSRDILCTFPTVGTILRVIVDQGSEKLSLHLLKVGKWVRFLKIICEVQAGLWRGVLMPSTKLRYMPDADLLVSQRQRFYDERLSSKWERMPLSSFPWPSRITETDYEHVPVVTLMDVVTHSEVTAKFKCVVRVAAIVPWRAEDFCSPPGTYRTRLTLEDPTARIHAFVHAEDGEKFFEGYPPVDVLKRKRNKLLGIAESDDGNEINNAPRNPPWVQCCIKSYYLVKGDVWGSRRYRIFGTRLVT* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1971632 1993484 - Vvi17g195 Vvi17g195 778892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g195 491 Pfam Telomeric single stranded DNA binding POT1/CDC13 40 171 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vvi17g195 491 CDD hPOT1_OB1_like 35 172 - -
Vvi17g195 491 PANTHER PROTECTION OF TELOMERES 1 38 490 IPR028389 GO:0000723|GO:0043047
Vvi17g195 491 SUPERFAMILY Nucleic acid-binding proteins 37 177 IPR012340 -
Vvi17g195 491 SMART Telo_bind_a_2 37 172 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vvi17g195 491 PANTHER PROTECTION OF TELOMERES PROTEIN 1A-LIKE ISOFORM X1 38 490 - -
Vvi17g195 491 SUPERFAMILY Nucleic acid-binding proteins 185 290 IPR012340 -
Vvi17g195 491 Gene3D - 184 297 IPR012340 -
Vvi17g195 491 Gene3D - 36 179 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g195 - - - vri:117905174 937.562
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g195 Blo04g00855 . . . . . . . . . . . . . . Cpe20g00155 . . . . . . . . . . . . . . . Cone2ag0767 . . . Lsi02g00236 Csa01g00718 . . . . . . . Bpe15g00507 Bma03g00921 . . . . . . . . . . . . . . . . . Cla04g01043 Cam04g1088 Cec01g1601 Cco01g1649 Clacu04g1114 Cmu04g1097 Cre01g1396 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008940 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 2 1 34