Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g196 ATGGCGGCCTCAAGATTCTCACTCTTCGGAACTTCAGTCCTCCGCCACCGCACCAACGTTTCTCCAATTCCTGCAATTCGACTCTCCTTTTCCCCATCTCGTTTCACTTGTTCCGCTGCGGTCGATACTGTCACTGCCGACAGCACAGACTCCCACCACCGCCATCCCTGGCCCGAATGGGTGACTTTCATCGACCGCTTGAAGACCAAAGGTTACTTTAGCGAAGCCCTTCCGGCCTCGGCCGACTACGACACTAATATGAACCTCTTCAAGGATGCTTGTCTCATCTTCGCTCGTGACCGCTTTGACGTTTTCAAATCATTGTCCAGAAAAGATATTCAAACTGTTGTGGAGGGTGGCTGCCCCAACCTTTTTCGAAAAGCTGTTAATTCAGCGAAAAGGTTGAGAGCATTTGTGCGATTAGATGAAGGAGATGTATGTAGTGCCTGCAATTTGCGAGGATCATGTGATAGAGCCTATGTGTTGCTAAAGGAATCTGAAGCAGCTGCCCGTACAGTAGATATTGTGCGTATTTTGTTGTTCTATGCTCTAGATCCACTTGTTACTTCAGGAGAGAAACCTCCTGGTAGAGAGCTTGTTGAGGTATCAGCAAGGAAACTGCTTTCAGAGTTGATTGAACTGAGCGACACACCTCTTGACCCAGCACTTGCAAAACCTGCTGCCATACCTCCACGTCGTAAGGAACAACATATGAATCTCACGGATGATGAAATGCCTCAAAATGTTCAAATGAAGAAAGGAGATTGGATCTGTCCTAACTGCAATTTCTTGAATTTTGCTAGAAATACACAATGCATGAAATGCCGTGAAGATGGCCCTAAAAGAGATAGTTTGAATGTGATTGAAATGAAGAAAGGAGATTGGACCTGTCCCGAATGTAACTTCATGAATTTTTCCAGAAATATACGATGCCTAAAGTGCAGAGCAGAAGGGCCTAAGAGGGTTGATGCAGCTGATATTCCAATGAAGAAAGGAGATTGGAATTGCCCACAGTGTGCGTTCATGAATTTTGCTAGCAAAACCGAGTGTTTCCGCTGCAGAGAGCCACGGCCCAAGAGACAGTTAAATCCTGGAGAATGGGAATGCCCCTCATGTGATTTCGTGAATTACAGAAGAAACACTGTCTGCCTGAAGTGCAATCGTGACCAGCCCAAAGAGGCAGCAACACCATATGAAGAGCATGTATGGAAGAAGCCTAGTAATCTTGGATAA 1233 45.9 MAASRFSLFGTSVLRHRTNVSPIPAIRLSFSPSRFTCSAAVDTVTADSTDSHHRHPWPEWVTFIDRLKTKGYFSEALPASADYDTNMNLFKDACLIFARDRFDVFKSLSRKDIQTVVEGGCPNLFRKAVNSAKRLRAFVRLDEGDVCSACNLRGSCDRAYVLLKESEAAARTVDIVRILLFYALDPLVTSGEKPPGRELVEVSARKLLSELIELSDTPLDPALAKPAAIPPRRKEQHMNLTDDEMPQNVQMKKGDWICPNCNFLNFARNTQCMKCREDGPKRDSLNVIEMKKGDWTCPECNFMNFSRNIRCLKCRAEGPKRVDAADIPMKKGDWNCPQCAFMNFASKTECFRCREPRPKRQLNPGEWECPSCDFVNYRRNTVCLKCNRDQPKEAATPYEEHVWKKPSNLG* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1993492 2012416 - Vvi17g196 Vvi17g196 778893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g196 410 ProSiteProfiles Zinc finger RanBP2 type profile. 330 359 IPR001876 -
Vvi17g196 410 Gene3D - 284 320 - -
Vvi17g196 410 Gene3D - 361 393 - -
Vvi17g196 410 Gene3D - 321 360 - -
Vvi17g196 410 Gene3D - 244 282 - -
Vvi17g196 410 SUPERFAMILY Ran binding protein zinc finger-like 360 392 IPR036443 -
Vvi17g196 410 ProSitePatterns Zinc finger RanBP2-type signature. 334 353 IPR001876 -
Vvi17g196 410 ProSiteProfiles Zinc finger RanBP2 type profile. 291 320 IPR001876 -
Vvi17g196 410 SUPERFAMILY Ran binding protein zinc finger-like 289 317 IPR036443 -
Vvi17g196 410 PANTHER ASPARAGINE-RICH PROTEIN 316 407 - -
Vvi17g196 410 PANTHER ASPARAGINE-RICH PROTEIN 280 321 - -
Vvi17g196 410 PANTHER ASPARAGINE-RICH PROTEIN 23 283 - -
Vvi17g196 410 SUPERFAMILY Ran binding protein zinc finger-like 324 360 IPR036443 -
Vvi17g196 410 ProSiteProfiles Zinc finger RanBP2 type profile. 363 392 IPR001876 -
Vvi17g196 410 PANTHER ZINC FINGER PROTEIN 280 321 - -
Vvi17g196 410 PANTHER ZINC FINGER PROTEIN 23 283 - -
Vvi17g196 410 PANTHER ZINC FINGER PROTEIN 316 407 - -
Vvi17g196 410 ProSiteProfiles Zinc finger RanBP2 type profile. 252 281 IPR001876 -
Vvi17g196 410 ProSitePatterns Zinc finger RanBP2-type signature. 367 386 IPR001876 -
Vvi17g196 410 Pfam Zn-finger in Ran binding protein and others 291 319 IPR001876 -
Vvi17g196 410 Pfam Zn-finger in Ran binding protein and others 330 358 IPR001876 -
Vvi17g196 410 Pfam Zn-finger in Ran binding protein and others 252 275 IPR001876 -
Vvi17g196 410 Pfam Zn-finger in Ran binding protein and others 365 386 IPR001876 -
Vvi17g196 410 SUPERFAMILY Ran binding protein zinc finger-like 247 279 IPR036443 -
Vvi17g196 410 SMART zf_4 332 356 IPR001876 -
Vvi17g196 410 SMART zf_4 365 389 IPR001876 -
Vvi17g196 410 SMART zf_4 254 278 IPR001876 -
Vvi17g196 410 SMART zf_4 293 317 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g196 - - - vvi:100268018 862.448
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37