Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g198 ATGTTATACCTTCTAAGCCTCTACGAAAACTATCTTTTAGGTCCAATCCCTACGTCATTAGGAAACTTGAAGTCTCTTGTTGATCCAGAACTTTCAGAAAACCAACTCAATGGTTCCCTTCCTACTTCACTAGGTAATCTGACCAACTTAGAAATTTTATTCCTCCGTGATAACAAACTTTCTGGTTACATTCCTCGAGAAATTGGGAAACTTCATAAGTTGGTTGTGCTAGAAATCAACACAAACCAGCTGTCTGGCTCTTTTCCGGAAGGCATTTGCCAATGTGGATCTCTGGTGCGCTTTACAATGGCCGGGAACAATATTACAGGGAGCATACCAGAAGATTTTGGAATCTCAACTGATCTAACCTTCCTTGATCTTTCTTCAAAACATTTGGTTGGACAATTTCTGAAAAAAAAAAAGGGAAGTTTAACTTCTCTCCTTGATCATCTCGACTTATCAGCAAACCGATTAAATGGGTCAATACCAGCGAACTTGGGTGACTGCTCGAACTTGTATTACTTGAACCTGAGCAATAACAGGCTTAGCCACAGAATTCCTGCTCAGATGGGTAAGCTGAGGTTGCAACCCTGCAAAAAGGGTTCTGGAGTAGGCCAACCACCTAGAGAGAACTCCAGAAATCGAAGAAGGTGA 654 41.44 MLYLLSLYENYLLGPIPTSLGNLKSLVDPELSENQLNGSLPTSLGNLTNLEILFLRDNKLSGYIPREIGKLHKLVVLEINTNQLSGSFPEGICQCGSLVRFTMAGNNITGSIPEDFGISTDLTFLDLSSKHLVGQFLKKKKGSLTSLLDHLDLSANRLNGSIPANLGDCSNLYYLNLSNNRLSHRIPAQMGKLRLQPCKKGSGVGQPPRENSRNRRR* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2042322 2043706 - Vvi17g198 Vvi17g198 778895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g198 217 PRINTS Leucine-rich repeat signature 148 161 - -
Vvi17g198 217 PRINTS Leucine-rich repeat signature 169 182 - -
Vvi17g198 217 SUPERFAMILY L domain-like 3 192 - -
Vvi17g198 217 Pfam Leucine Rich Repeat 171 188 IPR001611 GO:0005515
Vvi17g198 217 PANTHER RECEPTOR-LIKE PROTEIN 12 38 137 - -
Vvi17g198 217 PANTHER RECEPTOR-LIKE PROTEIN 12 93 194 - -
Vvi17g198 217 PANTHER RECEPTOR-LIKE PROTEIN 12 2 87 - -
Vvi17g198 217 Gene3D Ribonuclease Inhibitor 1 196 IPR032675 -
Vvi17g198 217 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 93 194 - -
Vvi17g198 217 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 38 137 - -
Vvi17g198 217 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 2 87 - -
Vvi17g198 217 MobiDBLite consensus disorder prediction 196 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g198 - - - vvi:100243949 199.904
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068882 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1