Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g20 ATGCCATTTGAAGTCATGGACCCGAGGGGTGTATCTGCATCGTCCCCCTTGTTTGATGACATCTGTTTTCCTGCTGAGAGACAAGTTGGATTTTGGAAGCCCAAAATCATGTCTGATCACCATGCAGAAGGAGATGGAGTAGCACGAATACCTGGCAGCAAGTCGGTTACTTCATCGCCCTTGGAAAAACTTTTACCAGTTGGATCAAAGTCAGTGGATTACTCGGAAGGACCAGAGTCCTATCTGGCTAGAGACCAGAAAGAAAAACTGCAGGTAAACAGAGAAGAGGGAACTGCTAATTTGTCTAGGACTCCATGGAGAACTGTGGATCACAATTCAAAAACATGGTCAAATTTGTACGTGCAGCCTGCTTCCTCTTACGTGGAAGTAAAAAAGACTAGTATCAATGGAGCCCTATATGAGAGCAGTCTCTTTTCAAGCTCATTGTCTGAAATATTTAATAGGAAGTTGAGAGTATCGACCAGTGATGTTCTATCTCATCAGTCTGCTGGCACTGTTGCTCCTCACTCTGAGGAAGAGAAGCTCTTTAAATCCCTTGAAGAAATTGAGGTTCAAACCCTCGGAAATCTCCTTCCTGATGAAGATGAGCTATTTTCGGGAGTGGTTGATGACATGGGGTATAATGCTCATGCAAATAATGGTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAACTAGAAGGGGATGATCATTTGTGTATCAGCCAAAGACATTCTGATTTTAATGGGGGAATTCCCAACAGTCAAGGAGGTTCTAATGGCTCACTTGCAAGTGAACACCCTTATGGTGAACACCCTTCCAGAACACTTTTTGTGCGAAATATCAACAGCAATGTTGAAGATTCAGAATTAAGGGATCTTTTTGAGCAATATGGAGACATCCGAACACTTTACACAGCTTGCAAGCATCGCGGGTTTGTTATGATTTCTTATTATGATATAAGGGCAGCCAGAAATGCAATGAGAGCCCTTCAGAATAAGCCACTGAGACGGAGGAAACTTGATATTCATTATTCAATTCCAAAGGACAATCCTTCGGAGAAAGATATCAACCAGGGTACCCTTGTGGTATTTAACCTTGATTCATCTGTTTCCAATGATGATCTTCGTCAAATTTTTGGCATTTATGGAGAAATTAAGGAAATCCGGGAAACTCCACACAAGCGGCATCACAAATTCATTGAATTTTTTGATGTTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGTTTGATGCAACTGTGCTCTTCTGAACTGGAGCAAGATGAATCCATTTTGTGTCAAAGCCCTGATGACAACTTATCATCTGGTTGCATGGCGGTTTCTCCTGGAATAAAGACATCTAGCTGCATGGATAATGTATCTATCCAGGACTTGCATTCTGCAGTTCGAATGCCTATTGGTTCATTTGTTGAAAATGCCACTTCCCATGGGAGTTCTAGTGTTCCAAACACCTTGCCCTCACCGATGAGAGTGGTATCCATCATCAATGAATTTGGTCTTGGTGAAACCAGCAACACATTGGATCAGATGAAGTTTGGCAACCAAAGTTTTCCTAATTACCATCCTCATTCCCTCCCTGAGTATCATGATAATTTAGCCAATGCTATTAGATACAACTCTTCTAGCACAATTGGGGACATGACTGGTCATGTTGGTCCGAGAATAACAGAGGGAATTGACAACAGGCACATCCACAGAGTGGGTTCAAATGGGCACCCGATTGAACTTAATGGAGGGGCTTTTGGCTCATCTGGAAATGGGAGTTGCCCTGTTCATGGACTTCATCGTGCATGGGGAAACTCCAGCTCGTATCAGCATCATTCTTCAAGTCCCATGATCTGGCCAAATTCTCCATCATTTAGTAATGGTGTTCATGCTCAACGGCCCACACAAGTACCCGGATTTCCTAGACCTCCACCTCATATGCTGAACATTGTTTCACCTGTGCACCACCATCATGTTGGATCAGCACCAGCTGTTAATCCCTCCCTTTGGGATAGACGGCATGCCTACAGTGGAGAATCTCCTGAAACTTCTGGTTTTCACTTGGGTTCTCTTGGGAGTGTGGGTTTTCCAGGAAGTTCTCCATTGCATCCCTTGGAAATGGCTTCTCACATCTTTCCCCATGTTGGTGGAAATTGCATGGACATATCTGCAAATGTCGGGCTGCGCTCTCCTCAGCAGATTTGCCATGTATTCCCTGGAAGGAATTCAATGCTTTCAATTCCCTCTTCTTTTGATTTGCCTATGGAGCGTGTGAGAAACCTCTCACACCGTAGAACTGAAGCCAATTCCAACCATACTGATAAGAAACAGTATGAACTTGACATTGATCGTATATTACGTGGGGAAGACTGCCGAACGACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGGCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCTCTTGCATATGCTCGAATTCAAGGAAAAACTGCTCTTATTGCTCATTTCCAAAACTCGAGCTTGATGAATGAGGATAAACGTTGCCGCCCTATTCTATTTCATACTGATGGTCCAAATGCAGGTGATCAGGAGCCATTCCCCATGGGTAGCAATATACGATCAAGACCAGGCAAAGCTCGAACTAGTGGGGGTGAGGAGAGTCAGCATCAAGGGAGCCCAACAACTTCTGCAAATGGAGAGGAATCTTCCAATGGAGCAGTCACTTTGTTGGGTTCTGCCAAGGACTCAGATTAA 2997 43.44 MPFEVMDPRGVSASSPLFDDICFPAERQVGFWKPKIMSDHHAEGDGVARIPGSKSVTSSPLEKLLPVGSKSVDYSEGPESYLARDQKEKLQVNREEGTANLSRTPWRTVDHNSKTWSNLYVQPASSYVEVKKTSINGALYESSLFSSSLSEIFNRKLRVSTSDVLSHQSAGTVAPHSEEEKLFKSLEEIEVQTLGNLLPDEDELFSGVVDDMGYNAHANNGDDFEDFDLFSSGGGMELEGDDHLCISQRHSDFNGGIPNSQGGSNGSLASEHPYGEHPSRTLFVRNINSNVEDSELRDLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLDSSVSNDDLRQIFGIYGEIKEIRETPHKRHHKFIEFFDVRAAEAALRALNRSDIAGKRIKLEPSRPGGSRRCLMQLCSSELEQDESILCQSPDDNLSSGCMAVSPGIKTSSCMDNVSIQDLHSAVRMPIGSFVENATSHGSSSVPNTLPSPMRVVSIINEFGLGETSNTLDQMKFGNQSFPNYHPHSLPEYHDNLANAIRYNSSSTIGDMTGHVGPRITEGIDNRHIHRVGSNGHPIELNGGAFGSSGNGSCPVHGLHRAWGNSSSYQHHSSSPMIWPNSPSFSNGVHAQRPTQVPGFPRPPPHMLNIVSPVHHHHVGSAPAVNPSLWDRRHAYSGESPETSGFHLGSLGSVGFPGSSPLHPLEMASHIFPHVGGNCMDISANVGLRSPQQICHVFPGRNSMLSIPSSFDLPMERVRNLSHRRTEANSNHTDKKQYELDIDRILRGEDCRTTLMIKNIPNKYTSKMLLAAIDEHHRGTYDFIYLPIDFKNKCNVGYAFVNMIDPLHIVPFHQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSRPGKARTSGGEESQHQGSPTTSANGEESSNGAVTLLGSAKDSD* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 157788 167943 - Vvi17g20 Vvi17g20 778717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g20 998 Gene3D - 364 443 IPR012677 -
Vvi17g20 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 353 IPR000504 GO:0003723
Vvi17g20 998 MobiDBLite consensus disorder prediction 252 275 - -
Vvi17g20 998 SUPERFAMILY RNA-binding domain, RBD 277 439 IPR035979 GO:0003676
Vvi17g20 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 346 IPR000504 GO:0003723
Vvi17g20 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 432 IPR000504 GO:0003723
Vvi17g20 998 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 987 - -
Vvi17g20 998 MobiDBLite consensus disorder prediction 933 998 - -
Vvi17g20 998 CDD RRM1_MEI2_like 279 355 IPR034453 -
Vvi17g20 998 SMART rrm1_1 824 900 IPR000504 GO:0003723
Vvi17g20 998 SMART rrm1_1 366 434 IPR000504 GO:0003723
Vvi17g20 998 SMART rrm1_1 281 349 IPR000504 GO:0003723
Vvi17g20 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 438 IPR000504 GO:0003723
Vvi17g20 998 PANTHER PROTEIN MEI2-LIKE 4 2 987 - -
Vvi17g20 998 MobiDBLite consensus disorder prediction 956 992 - -
Vvi17g20 998 CDD RRM3_MEI2_like 825 910 IPR034454 -
Vvi17g20 998 MobiDBLite consensus disorder prediction 252 268 - -
Vvi17g20 998 Pfam RNA recognition motif 2 822 918 IPR007201 -
Vvi17g20 998 Gene3D - 268 363 IPR012677 -
Vvi17g20 998 SUPERFAMILY RNA-binding domain, RBD 824 908 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g20 - - - vvi:100261030 2013.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1348 Vvi17g20 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0265 Cone19ag0248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1