Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g200 ATGTACAGTTGTTTTAACCATGTTGTTTCTCATTCTAAGAAGACACAAACTCTACTCCAATGGAAAGCCAGCCATAGAAAACAAAGCCATCCTCAAGGTGATGTACAAAATAATCTCCTCTCAATATCAACTTTTGATGGAAGAACAATGTATGAAGAGATTACAAAGGCCACCAAGGATTTTGATCCCATGTATTGCATCGGAAAAGGTGGGCATGGAAGGGTTTACAAGGCAGAGCTGTCCTCAGGTAATATTGTAGCTGTGAAAAAGCTTTACCCATCCGACATAGATACGGCAAATCAAAGGGACTTCTTCAATGTAGTAAGGGCACTGACAGAAATCAAGCATCGAAACATTGTGAGACTTCTTGGTTTCTGTTCACATCCACGACACTTCTTTTTGCCTCATATTTCTGACTTCAGCATTGCCAAGCTTCTAAAGCTAGACTCATCAAATCAGAGCGCACTTGCAGGCACATTCGGATACGTTACACCAGAACATGCTTATACACTGAGGGTGACAAAAAAAACCGATGTCTATAGTTTTGGAGTGATAGCTCTGGAAGTTATCAAAGGAAGACATCCTGGAGATCAGATCTTGTCTCTATCAGTTTCCCCACAGAAGGAGAACATAGTGTTAGAAGATATGTTGGACCCGCGACTCCCACCTCTTATAGCCCAAGATGAAGGGGAAGTGATATCTATCATAAAGCTCGTAACTGCATGCTTAAATGTCAACCCACAGTCCAGGCCAACTATGAAGATTATTTCTCAGATGTTATCACAGAGAATTTAG 795 41.13 MYSCFNHVVSHSKKTQTLLQWKASHRKQSHPQGDVQNNLLSISTFDGRTMYEEITKATKDFDPMYCIGKGGHGRVYKAELSSGNIVAVKKLYPSDIDTANQRDFFNVVRALTEIKHRNIVRLLGFCSHPRHFFLPHISDFSIAKLLKLDSSNQSALAGTFGYVTPEHAYTLRVTKKTDVYSFGVIALEVIKGRHPGDQILSLSVSPQKENIVLEDMLDPRLPPLIAQDEGEVISIIKLVTACLNVNPQSRPTMKIISQMLSQRI* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2046548 2049008 - Vvi17g200 Vvi17g200 778897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g200 264 SUPERFAMILY Protein kinase-like (PK-like) 36 260 IPR011009 -
Vvi17g200 264 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 20 134 - -
Vvi17g200 264 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 134 260 - -
Vvi17g200 264 Gene3D Phosphorylase Kinase; domain 1 19 132 - -
Vvi17g200 264 PANTHER LEUCINE RICH REPEAT KINASE 2 134 260 - -
Vvi17g200 264 PANTHER LEUCINE RICH REPEAT KINASE 2 20 134 - -
Vvi17g200 264 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g200 264 Pfam Protein kinase domain 137 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g200 264 Pfam Protein kinase domain 66 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g200 264 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Vvi17g200 264 Gene3D Transferase(Phosphotransferase) domain 1 133 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g200 - - - vri:117934482 324.709
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76303 PF00069 Pkinase 2.10E-11 CL0016 Vvi PK