Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g202 ATGGCATCCTCAACCTTACAGAAAATGCTCTCCCTTGTTTCCTTGCTCCTCTTGGTTATGTTGATTTCTTCAGACCATGTTTCTTCTTATTCTAATGAAGAAACACAAGCTCTTCTCAAATGGAAAGCTAGCCTTCAAAACCACAACCATTCTTCCCTCCTTTCGTGGGATCTTTATCCTAACAACTCCACCAATTCTTCTACCCACCTTGGAACGGCAACCAGTCCATGCAAATGGTATGGGATATCCTGCAACCATGCGGGAAGTGTCATCAAAATAAACCTCACAGACATGAACAACCTCTCTGGTCCTATCCCACCCCAAATCGGTCAGTTGGCATCTCTTTATGAGCTTGCTTTGTACACCAACCAACTGGAGGGTTCTATTCCTGCTTCTTTGGGTAATTTGAGCAACTTGGCCTCTTTGTATCTCTATGAAAATCAACTTTCGGGTCCCATCCCTTCCACTTTTGGAAATTTGAAACGTTTAACCGTGTTGTACTTGTTCAACAATAGCCTCTCTGGGCCTATCCCACCAGAAATAGGAAATTTGAAATCCCTGCAAGAGCTAAGCCTCTACGAAAACAATCTTTCTGGTCCAATCCCTGTGTCATTATGTGATCTGAGTGGCCTAACCCTCCTGCATCTCTATGCCAATCAACTTTCCGGTCCCATTCCTCAAGAAATAGGAAACTTGAAGTCTCTTGTTGATCTAGAACTTTCTGAAAATCAACTCAATGGTTCCATTCCTACTTCACTGGGTAATCTAACCAATTTAGAAATTTTATTCCTCCGTGATAATCAACTTTCTGGTTACATTCCTCAAGAAATTGGGAAACTTCATAAAAACTTAACCAGAGCTCTGTTCCAGGGAAACCGACTCACTGGAAATATATCTGAGGTAAAAATGGGAAGTTTAACTTCTCTTCACCTCTCCCAGCTAGATCTGAGTCACAACTTGCTTGCAGGTGGCATCCCGCCACAGATCCAAGGTTTGCAAAGCTTGGAGATGCTTGATCTCTCCCATAACAACCTTTGTGGTTTCATCCCAAAGGCTTTTGAGGACATGCCTGCCTTGTCGTATGGAGGCCATGGAAGTGTTTACAAAGCAGAGCTGCCATCAAGTAATATAGTAGCTGTGAAGAAGCTTCACCCATCCGACACAGAGATGGCAAATCAAAAGGATTTCTTAAATGAAATAAGGGCACTAACAGAAATCAAGCATCGAAACATAGTGAAACTTCTTGGTTTCTGTTCACATCCACGACACAAGTTTTTGGTCTACGAGTACCTTGAAAGAGGTAGCCTGGCTACAATCTTGAGCAGAGAAGAAGCTAAGAAATTGGGTTGGGCTACAAGGGTCAATATCATTAAAGGAGTGGCTCATGCTTTGGCTTACATGCACCATGATTGCTCACCCCCTATTGTTCATCGGGATGTATCAAGCAACAATATTCTGCTGGATTCTCAGTATGAAGCTCATATTTCTGACTTCGGCACTGCCAAGCTTCTAAAGCTAGACTCATCGAATCAGAGCATACTTGCAGGCACATTCGGATATCTTGCACCAGAGCTTGCTTATACAATGAAGGTGACCGAAAAAACTGATGTCTTTAGCTTTGGAGTAATAGCACTGGAAGTTATCAAAGGAAGACATCCTGGAGATCAGATCTTGTCTCTATCAGTTTCCCCAGAGAAGGATAACATAGCGTTGGAAGACATGTTGGACCCCCGACTCCCACCTCTCACACCCCAGGATGAGGGGGAAGTGATAGCTATCCTAAAGCAAGCAATTGAATGCTTAAAAGCCAACCCGCAATCCAGGCCAACCATGCAGACTGTTTCTCAGATGTTATCACAGAGAAAGTAG 1869 43.29 MASSTLQKMLSLVSLLLLVMLISSDHVSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNHAGSVIKINLTDMNNLSGPIPPQIGQLASLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGPIPSTFGNLKRLTVLYLFNNSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKNLTRALFQGNRLTGNISEVKMGSLTSLHLSQLDLSHNLLAGGIPPQIQGLQSLEMLDLSHNNLCGFIPKAFEDMPALSYGGHGSVYKAELPSSNIVAVKKLHPSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEYLERGSLATILSREEAKKLGWATRVNIIKGVAHALAYMHHDCSPPIVHRDVSSNNILLDSQYEAHISDFGTAKLLKLDSSNQSILAGTFGYLAPELAYTMKVTEKTDVFSFGVIALEVIKGRHPGDQILSLSVSPEKDNIALEDMLDPRLPPLTPQDEGEVIAILKQAIECLKANPQSRPTMQTVSQMLSQRK* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2090856 2094257 - Vvi17g202 Vvi17g202 778899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g202 622 SUPERFAMILY Protein kinase-like (PK-like) 345 618 IPR011009 -
Vvi17g202 622 SMART LRR_sd22_2 184 210 - -
Vvi17g202 622 SMART LRR_sd22_2 332 358 - -
Vvi17g202 622 SMART LRR_sd22_2 136 162 - -
Vvi17g202 622 SMART LRR_sd22_2 256 282 - -
Vvi17g202 622 Pfam Leucine rich repeat N-terminal domain 32 85 IPR013210 -
Vvi17g202 622 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 99 299 - -
Vvi17g202 622 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 303 359 - -
Vvi17g202 622 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 361 621 - -
Vvi17g202 622 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 7 98 - -
Vvi17g202 622 ProSiteProfiles Protein kinase domain profile. 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g202 622 PRINTS Leucine-rich repeat signature 311 324 - -
Vvi17g202 622 PRINTS Leucine-rich repeat signature 332 345 - -
Vvi17g202 622 CDD STKc_IRAK 359 620 - -
Vvi17g202 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 98 - -
Vvi17g202 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 303 359 - -
Vvi17g202 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 99 299 - -
Vvi17g202 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 361 621 - -
Vvi17g202 622 Pfam Protein kinase domain 359 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g202 622 SUPERFAMILY L domain-like 75 361 - -
Vvi17g202 622 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Vvi17g202 622 Pfam Leucine rich repeat 310 361 IPR001611 GO:0005515
Vvi17g202 622 Gene3D Transferase(Phosphotransferase) domain 1 432 622 - -
Vvi17g202 622 Gene3D Ribonuclease Inhibitor 30 199 IPR032675 -
Vvi17g202 622 ProSitePatterns Tyrosine protein kinases specific active-site signature. 475 487 IPR008266 GO:0004672|GO:0006468
Vvi17g202 622 SMART LRR_typ_2 160 184 IPR003591 -
Vvi17g202 622 SMART LRR_typ_2 136 159 IPR003591 -
Vvi17g202 622 SMART LRR_typ_2 208 232 IPR003591 -
Vvi17g202 622 SMART LRR_typ_2 332 355 IPR003591 -
Vvi17g202 622 SMART LRR_typ_2 256 280 IPR003591 -
Vvi17g202 622 Gene3D Phosphorylase Kinase; domain 1 361 431 - -
Vvi17g202 622 Gene3D Ribonuclease Inhibitor 301 360 IPR032675 -
Vvi17g202 622 Gene3D Ribonuclease Inhibitor 200 300 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76305 PF00069 Pkinase 4.10E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g202 - - vvi:100243949 616.69