Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g203 ATGATATGCATAAATCTTAACAGCACATGCAGTACATCAACCAAAACCATGGCATTCTCCACCTTGAAGAAAATGCTCTCCCTTGTTTCCTTGCTCCTATGGATTATGTTGGTTTGTTCAGACAATGTTTCTTCTCATTCTAATGAAGAAACACAAGCTCTGCTCAAATGGAAAGCCACCCTTCTCAACCAAAACCTGCTTTTAACTCCATGCAAATGGTTCGGGATATCTTGCAAGGCAGGAAGTGTAATCAGAATAAACCTCACAGATTTGGGTTTAATCGGTACTCTCCAAGACTTCTCATTCTCGTCTTTTCCTAATCTTGCATATTTTGATATCAACATGAACAAGCTCTCTGGGAGAATACCGTCGGAAATCGGCCTATTAACTAATCTCGAGTCTCTTTGTGATCTTTCTTTGTACACCAACAAACTGGAGGGAACAATTCCTGCTTCTCTGGGTAATTTGAGCAACTTGACCAATTTGTATCTTGATGAAAATAAACTTTCTGGTCCCATCCCTTCTACCTTGGGCAATTTAAAAAGTCTAACTTTGTTGCGCCTCTACAACAATCAACTCTCTGGGCCTATCCCAACAGAAATAGGAAATTTGAAGCACCTCCGGAATCTAAGCCTTTCCAGTAACTATCTTTCAGGTCCAATCCCCATGTCATTAGGTGATCTGAGTGGCCTAAAATCTCTGCAGCTCTTTGATAATCAACTTTCTGGCCCCATTCCTCAAGAAATGGGAAACTTGAGATCTCTTGTTGACCTAGAAATATCCCAAAATCAACTCAATGAAATAGACACGAACCAGCTATCTGGTTTTTTACCAGAAGGCATATGCCAAGCCAGAGCTCGGCTTCAGGGAAACCAACTCACTGGAAATATATCCGAGGCATTTGGGGTCTGTCCAAACCTGTATCACATCAACTTGAGCAACAACAAGTTCTATGGGGAACTTTCTCAAAATTGGGGAAGTGTATCGTCTCTGTGGAAGCTGATTTTGAATGATAACCGACTTTCCGGGAATATACCACCTGAACTTGGATCGCTTGCTGACCTTGGGTATCTAGACCTGTCAGGAAATAGATTGAATGGGTCAATACCAGAGCACTTGGGTAACTGCTTGGACTTGAATTACTTGAACCTGAGCAACAACAAACTCAGCCACGGAATTCCGGTTCAGATGGGCAAGCTCAGTCACCTCTCCCTGCTTGATCTGAGTCACAACTTACTTACAGGTGAAATCCCATCACAAATCCAAGGTTTGCAGAGCTTAGAGAAGCTTAATCTATCCCATAACAACCTATCTGCATTTCAGAATACTGAAAATCTCTTCTCAATCTCGACTTTTGATGGAAGAACAACGTATGAAGCAATCATAGAGGCGACCAAGGATTTTGATCCCATGTATTGCATCGGAGAGGGAGGACATGGAAGCGTATACAAAGCAGAGCTGCCGTCAGGTAACATAGTAGCTGTGAAGAAGCTTCACCGATTCGACATTGACATGGCACATCAAAAGGATTTCGTGAATGAAATAAGAGCATTGACAGAGATAAAGCATCGAAATATCGTGAAGCTTCTGGGTTTCTGCTCACATTCACGACACTCATTTCTGTTTCTGAAGCTAGACTCATCAAACTGGAGCACTCTTGCAGGCACATATGGATATGTCGCACCAGAGCTTGCTTACACGATGAAGGTAACCGAGAAATGCGATGTCTACAGCTTTGGAGTGCTGGCACTTGAAGTGATGAGAGGAAGACATCCTGGAGATCTTATCTCCTCTCTATCAGATTCACCAGGGAAGGATAACGTAGTGTTGAAAGATGTGTTAGATCCTCGACTCCCACCTCCCACATTCCGAGACGAAGCAGAAGTGACGTCTGTCATACAGCTCGCAACTGCATGCTTAAACGGCAGCCCACAATCTAGGCCGACCATGCAGATGGTTTCTCAGATGTTGTCACAAAGGATTTAA 1986 43.1 MICINLNSTCSTSTKTMAFSTLKKMLSLVSLLLWIMLVCSDNVSSHSNEETQALLKWKATLLNQNLLLTPCKWFGISCKAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGRIPSEIGLLTNLESLCDLSLYTNKLEGTIPASLGNLSNLTNLYLDENKLSGPIPSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNEIDTNQLSGFLPEGICQARARLQGNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSAFQNTENLFSISTFDGRTTYEAIIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLHRFDIDMAHQKDFVNEIRALTEIKHRNIVKLLGFCSHSRHSFLFLKLDSSNWSTLAGTYGYVAPELAYTMKVTEKCDVYSFGVLALEVMRGRHPGDLISSLSDSPGKDNVVLKDVLDPRLPPPTFRDEAEVTSVIQLATACLNGSPQSRPTMQMVSQMLSQRI* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2103261 2107856 - Vvi17g203 Vvi17g203 778900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g203 661 SUPERFAMILY L domain-like 287 440 - -
Vvi17g203 661 SUPERFAMILY L domain-like 64 283 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 129 266 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 542 660 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 23 130 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 326 439 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 269 356 - -
Vvi17g203 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 442 541 - -
Vvi17g203 661 ProSitePatterns Protein kinases ATP-binding region signature. 474 497 IPR017441 GO:0005524
Vvi17g203 661 ProSiteProfiles Leucine-rich repeat profile. 426 447 IPR001611 GO:0005515
Vvi17g203 661 SUPERFAMILY Protein kinase-like (PK-like) 444 657 IPR011009 -
Vvi17g203 661 SMART LRR_typ_2 352 376 IPR003591 -
Vvi17g203 661 SMART LRR_typ_2 424 449 IPR003591 -
Vvi17g203 661 SMART LRR_typ_2 156 179 IPR003591 -
Vvi17g203 661 SMART LRR_typ_2 252 275 IPR003591 -
Vvi17g203 661 SMART LRR_typ_2 180 204 IPR003591 -
Vvi17g203 661 SMART LRR_typ_2 400 423 IPR003591 -
Vvi17g203 661 Gene3D Ribonuclease Inhibitor 394 445 IPR032675 -
Vvi17g203 661 Gene3D Ribonuclease Inhibitor 46 190 IPR032675 -
Vvi17g203 661 ProSiteProfiles Protein kinase domain profile. 468 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g203 661 PRINTS Leucine-rich repeat signature 355 368 - -
Vvi17g203 661 PRINTS Leucine-rich repeat signature 424 437 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 542 660 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 326 439 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 23 130 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 129 266 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 442 541 - -
Vvi17g203 661 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 269 356 - -
Vvi17g203 661 Pfam Protein kinase domain 549 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g203 661 Pfam Protein kinase domain 473 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g203 661 Pfam Leucine rich repeat 379 437 IPR001611 GO:0005515
Vvi17g203 661 Pfam Leucine rich repeat 157 217 IPR001611 GO:0005515
Vvi17g203 661 Gene3D Transferase(Phosphotransferase) domain 1 543 661 - -
Vvi17g203 661 Gene3D Ribonuclease Inhibitor 282 393 IPR032675 -
Vvi17g203 661 Gene3D Ribonuclease Inhibitor 191 279 IPR032675 -
Vvi17g203 661 Gene3D Phosphorylase Kinase; domain 1 446 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g203 - - - vvi:109124293 367.851
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1481 Vvi17g203 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g203 . . . . . . . . . . . Cma11g00083 . . . . . . . . . . . . Cla06g01679 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00084 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76306 PF00069 Pkinase 2.80E-09 CL0016 Vvi PK