Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g205 ATGATTGGGCGGTTGTTGCTTCAGCTGATCATCTTCATACTATGCTTGACACGAGCATCATCAGCTGCTCCATCTCTAGCACAGCCTGGTTGTAACGATGCCTGTGGAAGTGTTTCCATTCCATACCCGTTTGGTGTAGGGAAGGACTGCTACCTTAATGAATGGTTCTCTATAAATTGCAAACATTCCACACCCTTCTTTACCCATCCTAACCTCAATGGTTCGCAGGTGAGCTCCATTATCACTGGAGGACGAGACTGTGGTGGTTCAAACTCCCATACAGGTTTAAGCGTTGTTGGAGGATCCTTGTTTCTACTCCTAGGGAGCTTTTGGTTGTATAAAGTACTTAAGAAAAGGAGGGAAATCAAACTGAAAAAACAATTCTTTAAACAAAATGGTGGTTTGTTATTACAACAACAAATATCTTCTAATAAAGTTGTTGAAAAAACAAAGATTTTCACTACAGAAGAGTTGGAGAAGGCAATAGACAATTTCAATACAAACAGAATTCTTGATCAAGGAGGTCAAGGGACGGTTTATAAAGAAATGAATGTGAAGTCTGTGCTTCTGCTCATCTCCTTACTATGGCTAACAACTGCGTCAACAGCTACTCCCTCCATGGCAAAGCAAAACTGCCAAGAACGATGCGGAGATGTTACCATTCCATACCCATTTGGAATAGGGAAAGATTGCTACCTTAATGAGTGGTTTGCAGTCAACTGCAACGATTCTTTTAATCCTCCAACGCCATATTTGAGTCATCCTGAGCTCAATCTGAAGCTGACGTTTGTATCACTGGCTTACCAACTGGTCACTGTTATCAGCCCCATGGCTGTCTACTGTCAAGACCATGACAGGAATAGATCGACATGGAAGGGCATTGATTTGAGTAAAACCCCATTTTTTTACTCAGAAGGTAACGCACTGAGGGTGGTGGGTTGTGCCAATTCGGTCCTGATCACGCGTCAAGGTACCATCTTAGCAGGCTGCTCTTCCATTTGCGATAACAGCTCTAGTGTTCTGAGCAATGGTTGCTACGGGATCAACTGTTGCAAAACCACAGTTCCATCCAATCTTGATTTCTATATTCTGAACACCACATGGAGTACAAATATGGGCACAGAATTGAATTGTACGTATGCTGCCTTCGGTAGAAATTTCATTTTGAGGGGGAAGTCTTCAGGTTCAGGTATGGAATATGAGGCTTCATCGGAGGGAGAAATGATCTGGATGATAAAAGAATCGGTGGAGGGCAGTGATTGTCACAAAAACACAGTCCCTGACGGGGCACTGGGAAATCATTCTTATTATTCTTGCTCCTGTCCGGCTTACCAAGAAGGGAACCCTTATCTACCCAATGGATGCCAAGTTGTTGAAGTATGTGCAAACTGCAAAGGAAGATGTCTAACCAGAATTGACGGTCGTTTCTTCTGCGATGAAAGATCTTTGGCTTCAAAATTTTGGATTCTAGGTATTAGCCTAGGTGGGGGATTGTTGTTTCTACTTCTTGGAGGGTTCTGGTTATATAAAGTTTTAAGGAGAAGGCGAAAGATCAAACTCAGAGAACAGTTCTTCCAGCAACAGTTATTACAACACCAAATGTCTTCTAATGAAATCAGCATTGAGAATACAAAAATATTCACTTTCAATGAATTGAAGAAGGCAAGTGACAACTTCAATGAGAATCGTATTCTTGGTCGTGGAGGTCAAGGAACGGTTTATAAAGGTATGTTGACTGATGGAAGAATCGTAGCCATTAAGAAGTCAAAAATAGTTGATGAGAGTCAATATGAGCAATTCATCAATGAGATTGTGATTCTTTCCCAACTTAATCATAGAAATATAGTAAAGCTATTGGGATGTTGCTTGGAGATAGAAGTTCCCTTATTAGTTTACGAGTTTATCTCGCACGGAACTCTATTTCAGCTTATTCATGATGAAAACAATGAGTTGCCATTTTCTTGGGAAAGGCGCTTGGAGATTGCCACAGAGGTAGCAGGAGCACTTGCTTACTTACATTCTGCCTCTAGTACACCTATTTTTCATAGAGATATCAAGTCTAAAAATATACTCTTAGATGAGAAATATAGAGCAAAAGTGGCAGATTTTGGGACATCGAGGTCTGTTTCCATTGACCAAACTCACTTGACTACTCTTGTGCGAGGGACTTTCGGCTACTTAGATCCAGAATATTTTCGAACAGGACAATTCACTGAAAAAAGTGATGTATATAGTTTTGGAATTGTTTTGGTTGAGCTTTTAACGGGCCAAAAGCCGATTTCTTCAACAAGAACCGAAGAAGAGAGAAGCTTAGCAAGTTATTTTATTTTGTCAATAGAGGAGACAAACTTATTTGATATTCTTGATGCTCAAGTTGTGAAGGAGGGTGGAGAAGAGGAGATAATGGCTGTTGTTAACGTTGCAACACAATGTTTGAATTTGAATGGGAAGAAAAGGCCTACAATGAAGGAAGTAGCCTTAGAGCTAGAGAGGGTCAAATCTCATCTGCCTCTACATTATCTTATACCCCATAATAACTTCTATAGAATCCTAGAAAACAGGAATGGACTAATTTCTATTGCCAAAGGAGTTCTAACTTCTGACTACTATACCGGAGCCAAAGTCCTAACCAACCCAACCCCACCACACCACCGGACTTGGCTTGAACTGGGGTGGCCAGGTGGTCTGCTAGTTAGAATTGGGCTTGGGGTGGCGTCACCTTCCTGA 2727 41.22 MIGRLLLQLIIFILCLTRASSAAPSLAQPGCNDACGSVSIPYPFGVGKDCYLNEWFSINCKHSTPFFTHPNLNGSQVSSIITGGRDCGGSNSHTGLSVVGGSLFLLLGSFWLYKVLKKRREIKLKKQFFKQNGGLLLQQQISSNKVVEKTKIFTTEELEKAIDNFNTNRILDQGGQGTVYKEMNVKSVLLLISLLWLTTASTATPSMAKQNCQERCGDVTIPYPFGIGKDCYLNEWFAVNCNDSFNPPTPYLSHPELNLKLTFVSLAYQLVTVISPMAVYCQDHDRNRSTWKGIDLSKTPFFYSEGNALRVVGCANSVLITRQGTILAGCSSICDNSSSVLSNGCYGINCCKTTVPSNLDFYILNTTWSTNMGTELNCTYAAFGRNFILRGKSSGSGMEYEASSEGEMIWMIKESVEGSDCHKNTVPDGALGNHSYYSCSCPAYQEGNPYLPNGCQVVEVCANCKGRCLTRIDGRFFCDERSLASKFWILGISLGGGLLFLLLGGFWLYKVLRRRRKIKLREQFFQQQLLQHQMSSNEISIENTKIFTFNELKKASDNFNENRILGRGGQGTVYKGMLTDGRIVAIKKSKIVDESQYEQFINEIVILSQLNHRNIVKLLGCCLEIEVPLLVYEFISHGTLFQLIHDENNELPFSWERRLEIATEVAGALAYLHSASSTPIFHRDIKSKNILLDEKYRAKVADFGTSRSVSIDQTHLTTLVRGTFGYLDPEYFRTGQFTEKSDVYSFGIVLVELLTGQKPISSTRTEEERSLASYFILSIEETNLFDILDAQVVKEGGEEEIMAVVNVATQCLNLNGKKRPTMKEVALELERVKSHLPLHYLIPHNNFYRILENRNGLISIAKGVLTSDYYTGAKVLTNPTPPHHRTWLELGWPGGLLVRIGLGVASPS* 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2135972 2148416 + Vvi17g205 Vvi17g205 778902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g205 908 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 72 IPR045274 GO:0007166
Vvi17g205 908 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 195 835 IPR045274 GO:0007166
Vvi17g205 908 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 101 183 IPR045274 GO:0007166
Vvi17g205 908 ProSiteProfiles Protein kinase domain profile. 559 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g205 908 SMART serkin_6 559 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g205 908 SUPERFAMILY Protein kinase-like (PK-like) 535 829 IPR011009 -
Vvi17g205 908 Pfam Wall-associated receptor kinase galacturonan-binding 31 81 IPR025287 GO:0030247
Vvi17g205 908 Pfam Wall-associated receptor kinase galacturonan-binding 212 273 IPR025287 GO:0030247
Vvi17g205 908 Gene3D Phosphorylase Kinase; domain 1 137 197 - -
Vvi17g205 908 Gene3D Phosphorylase Kinase; domain 1 529 634 - -
Vvi17g205 908 Pfam Protein kinase domain 559 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g205 908 Gene3D Transferase(Phosphotransferase) domain 1 635 839 - -
Vvi17g205 908 PANTHER - 101 183 - -
Vvi17g205 908 PANTHER - 14 72 - -
Vvi17g205 908 PANTHER - 195 835 - -
Vvi17g205 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Vvi17g205 908 CDD STKc_IRAK 565 831 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76307 PF00069 Pkinase 3.20E-51 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g205 - - vvi:104882358 1276.92