Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g21 ATGGAAGAAGCGAGAAGCGAATTGGAGAGAGAAGAAGATGAAGAGGCTACCGAGCTTCTAAGGGACCGATTCCGACTCTCCACCATCTCAATTGTGGAAGCTCAAGCGAAGAAAAGCGATATGGAAATCTCGGAGCCGATTGTGGCCTGCATTTCCGATTTGGCCTTCAAGTATACAGCAGAACAGTTGGCAAAGGACCTTGAGTTATTTTCTCAGCATGCGGGTCGTAAGACTGTCAACATGGAAGATGTCATCCTCTCTGCACATAGAAACAAACATTTAGCCTCCTCCTTGAGGTCCTTCTGCAATGATCTCAAAGCAAAAGAAATCCCATCTGAGAGGAAGCGGAAGAAAGCATCAAGAAAGGAGGACAAAGCTTCCACCAGCGTGGTCCATATTCCAGATCTCTAA 411 46.47 MEEARSELEREEDEEATELLRDRFRLSTISIVEAQAKKSDMEISEPIVACISDLAFKYTAEQLAKDLELFSQHAGRKTVNMEDVILSAHRNKHLASSLRSFCNDLKAKEIPSERKRKKASRKEDKASTSVVHIPDL* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 175745 178059 - Vvi17g21 Vvi17g21 778718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g21 136 MobiDBLite consensus disorder prediction 111 130 - -
Vvi17g21 136 MobiDBLite consensus disorder prediction 111 136 - -
Vvi17g21 136 Coils Coil 1 21 - -
Vvi17g21 136 Pfam CENP-S protein 20 94 IPR029003 GO:0071821
Vvi17g21 136 Gene3D Histone, subunit A 1 120 IPR009072 GO:0046982
Vvi17g21 136 PANTHER CORTISTATIN 4 132 - -
Vvi17g21 136 SUPERFAMILY Histone-fold 37 93 IPR009072 GO:0046982
Vvi17g21 136 PANTHER CENTROMERE PROTEIN S 4 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g21 K11511 APITD1, CENPS, MHF1; centromere protein S - vvi:100257797 227.254
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g21 . . . . . Bpe13g00182 Bma06g00286 . . Cmo18g00239 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0264 . Lsi02g00528 Csa01g00991 Chy12g01143 Cme12g01561 . . Bda11g01572 . . . . . Sed01g1538 . . . Cma18g00291 . Car18g00251 Cpe09g00941 . Bhi08g01540 Tan05g3012 Cmetu12g0674 Lac10g0614 . . . Cla03g00379 Cam03g0399 Cec03g0385 Cco03g0400 Clacu03g0398 Cmu03g1003 Cre03g0695 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012248 1 2 0 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28