Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g211 ATGGACAGCATCCGGACTGGTCCCTTTGGCCAAATTTTCCGGCCGGATAACTTTGTTTTTGGGCAGTCTGGTGCCGGAAACAATTGGGCGAAGGGACACTACACGGAAGGCGCAGAGCTTATTGATTCGGTCCTTGATGTTGTGAGGAAGGAGGTTGAGAATTGTGACTGTTTGCAAGGATTTCAAGTATGTCATTCTCTTGGAGGTGGAACGGGGTCTGGAATGGGAACTCTGCTCATTTCAAAGATCCGAGAAGAGTACCCAGATAGGATGATGCTTACATTTTCAGTCTTCCCGTCTCCAAAGGTATCCGACACAGTTGTAGAGCCTTACAATGCAACGCTTTCTGTTCATCAGCTGGTGGAGAATGCCGATGAGTGTATGGTGCTTGACAATGAAGCACTCTATGATATCTGCTTCAGAACTCTCAAGCTCGCCACCCCAAGTTTTGGGGACTTGAATCATCTGATCTCTGCAACAATGAGTGGAGTAACTTGCTGCTTGAGGTTTCCGGGCCAGCTGAACTCAGACCTTCGAAAGCTAGCCGTGAACTTAATCCCATTCCCTCGACTTCACTTCTTCATGGTGGGGTTTGCTCCTTTGACCTCCCGCGGATCGCAGCAGTACCGGGCACTGACTGTCCCTGAGCTGACGCAACAAATGTGGGATGCCAAGAACATGATTAACATGAATGACCTTGTTGCTGAGTACCAACAGTACCAGGATGCTACAGCTGATGATGAGGGTGATTATGAAGACGATGATGGGGACACTGAGAGCTGA 783 48.91 MDSIRTGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEVENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMINMNDLVAEYQQYQDATADDEGDYEDDDGDTES* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2199754 2201874 - Vvi17g211 Vvi17g211 778908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g211 260 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 171 IPR036525 -
Vvi17g211 260 SUPERFAMILY Tubulin C-terminal domain-like 172 233 IPR008280 -
Vvi17g211 260 PRINTS Tubulin signature 21 32 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Tubulin signature 34 58 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Tubulin signature 60 78 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Tubulin signature 79 100 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Tubulin signature 104 117 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Tubulin signature 118 138 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 Gene3D Tubulin/FtsZ, GTPase domain 1 190 IPR036525 -
Vvi17g211 260 PANTHER TUBULIN 1 228 IPR000217 GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 16 27 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 36 54 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 80 92 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 140 152 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 158 167 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 173 186 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PRINTS Beta-tubulin signature 193 209 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 CDD beta_tubulin 1 232 - -
Vvi17g211 260 Pfam Tubulin C-terminal domain 189 229 IPR018316 -
Vvi17g211 260 SMART Tubulin_4 1 172 IPR003008 GO:0005525
Vvi17g211 260 Gene3D - 191 249 IPR037103 -
Vvi17g211 260 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 68 74 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi17g211 260 PANTHER TUBULIN BETA-6 CHAIN 1 228 - -
Vvi17g211 260 Pfam Tubulin/FtsZ family, GTPase domain 3 139 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g211 K07375 TUBB; tubulin beta - vvi:100259401 460.685
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015897 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8